>CHO774 (CHO774Q) /CSM/CH/CHO7-D/CHO774Q.Seq.d/
XXXXXXXXXXCACATCATCATATGGTACCACCNCAATTACAACAAGTACCACNTGGTGTA
AATGTACACACAATGAAACCACCAGGTTCTTTACAACCAGGTGGCGGTGGTGTCGTTCAA
CCACAAGGTATCGTTCAACCTCAAGGTATCGTACAGCCACAGGGCGGTGTAGTTCAACCA
TCTGCAGGCGGTGCTCCAAAAACAATGTATCAACAACAACAGCAACAACAACAACAAACT
GGTCAACCTGGAGGTCCAATGGGTGTCCAAAGAGGTGGCCATCTACCACCACAACAACAA
CCACAACAACAACAACAACAACCACCACCACAATTCATTCAAGGTATTCCACCCGGTGCT
AATTTAGTCATCTCAAATGGTCCACCCAATCAACCATTTGTATTCCAAGGTGCTCACCCA
CCTTATGCCGTACCACATCCTCAATACCCAATGCCACCCCAAGGTATTCAAGGTGGTAAT
AAAAGATTTTATCAACCACCACCACAAGGTTATCCTCAAGTGCAACCAATGATAATTCCA
CAACAAGGTCAAGTTGTATCTCAAAATTCACCACAACAAGATTCTCCTTCAAATCGTTTA
AATCAACAAGTTCCACCT

---HHHMVPPQLQQVPXGVNVHTMKPPGSLQPGGGGVVQPQGIVQPQGIVQPQGGVVQPS
AGGAPKTMYQQQQQQQQQTGQPGGPMGVQRGGHLPPQQQPQQQQQQPPPQFIQGIPPGAN
LVISNGPPNQPFVFQGAHPPYAVPHPQYPMPPQGIQGGNKRFYQPPPQGYPQVQPMIIPQ
QGQVVSQNSPQQDSPSNRLNQQVPP

Frame A:
---tssygttxittsttwckcthnettrffttrwrwcrsttryrstsryrtatgrcssti
crrcsknnvstttattttnwstwrsngcpkrwpsttttttttttttttttihsrystrc*
fshlkwstqsticiprcsptlcrttssipnatprysrw**kilsttttrlsssatndnst
trssciskftttrfsfksfkstsst


Frame B:
---HHHMVPPQLQQVPXGVNVHTMKPPGSLQPGGGGVVQPQGIVQPQGIVQPQGGVVQPS
AGGAPKTMYQQQQQQQQQTGQPGGPMGVQRGGHLPPQQQPQQQQQQPPPQFIQGIPPGAN
LVISNGPPNQPFVFQGAHPPYAVPHPQYPMPPQGIQGGNKRFYQPPPQGYPQVQPMIIPQ
QGQVVSQNSPQQDSPSNRLNQQVPP


Frame C:
---iiiwyhxnynkyhxv*mytq*nhqvlynqvavvsfnhkvsfnlkvsyshrav*fnhl
qavlqkqcinnnsnnnnklvnlevqwvskevaiyhhnnnhnnnnnnhhhnsfkvfhpvli
*ssqmvhpinhlyskvlthlmpyhilntqchpkvfkvvikdfinhhhkvilkcnq**fhn
kvklylkihhnkillqiv*inkfh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ159 (VHQ159Q) /CSM/VH/VHQ1-C/VHQ159Q.Seq.d/                        587   e-167
VHG442 (VHG442Q) /CSM/VH/VHG4-B/VHG442Q.Seq.d/                        587   e-167
CHO774 (CHO774Q) /CSM/CH/CHO7-D/CHO774Q.Seq.d/                        587   e-167
AFM594 (AFM594Q) /CSM/AF/AFM5-D/AFM594Q.Seq.d/                        587   e-167
VHG405 (VHG405Q) /CSM/VH/VHG4-A/VHG405Q.Seq.d/                        579   e-164
VHO313 (VHO313Q) /CSM/VH/VHO3-A/VHO313Q.Seq.d/                        577   e-164
SLD185 (SLD185Q) /CSM/SL/SLD1-D/SLD185Q.Seq.d/                        571   e-162
CHL729 (CHL729Q) /CSM/CH/CHL7-B/CHL729Q.Seq.d/                        355   5e-97
VHE720 (VHE720Q) /CSM/VH/VHE7-A/VHE720Q.Seq.d/                        313   2e-84
VFC671 (VFC671Q) /CSM/VF/VFC6-C/VFC671Q.Seq.d/                         38   0.15

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC087751|AC087751.1 Homo sapiens chromosome 8 clone RP11-534K13 map 8, LOW-PASSSEQUENCE SAMPLING.    38   0.20   3
DR408101|DR408101.1 mhm87h11.b1 C.remanei EST SB146 Caenorhabditis remanei cDNA 5, mRNA sequence.    34   2.1    2
AP004054|AP004054.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1249_F12.    36   3.9    6
AC133801|AC133801.2 Rattus norvegicus clone CH230-13A21, WORKING DRAFT SEQUENCE, 1 ordered piece.    32   5.7    2
AC092625|AC092625.2 Homo sapiens BAC clone RP11-266L10 from 2, complete sequence.    42   5.8    2
BF976566|BF976566.1 602244231F1 NIH_MGC_48 Homo sapiens cDNA clone IMAGE:4335535 5', mRNA sequence.    32   7.7    2
CS086326|CS086326.1 Sequence 30 from Patent WO2005042786.          42   8.3    3
CR940352|CR940352.2 Theileria annulata genomic DNA chromosome 3.    42   13     1
CV435371|CV435371.1 58915.1 Suspension culture Solanum tuberosum cDNA clone 58915 5', mRNA sequence.    42   13     1
DN493309|DN493309.1 X077H09.3pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X077H09 3', mRNA sequence.    42   13     1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DE7) RecName: Full=Ataxin-2 homolog;                              172   7e-42
AP008209_1874(AP008209|pid:none) Oryza sativa (japonica cultivar...    37   0.57
EF137866_1(EF137866|pid:none) Danio rerio ectodysplasin (eda) mR...    36   0.74
(Q9JJ00) RecName: Full=Phospholipid scramblase 1;          Short...    35   1.7
U40187_5(U40187|pid:none) Caenorhabditis elegans cosmid F11H8, c...    35   1.7
AF062008_1(AF062008|pid:none) Caenorhabditis elegans cyk-1 mRNA,...    35   1.7
AK176073_1(AK176073|pid:none) Arabidopsis thaliana mRNA, complet...    35   1.7
AK149903_1(AK149903|pid:none) Mus musculus bone marrow macrophag...    35   1.7
U40187_4(U40187|pid:none) Caenorhabditis elegans cosmid F11H8, c...    35   1.7
AK003628_1(AK003628|pid:none) Mus musculus 18-day embryo whole b...    35   1.7

 psg: 0.79  gvh: 0.31  alm: 0.52  top: 0.53  tms: 0.00  mit: -0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHO774 is nuc

>CHO774Z.Seq
NNNNNNNNNNCACATCATCATATGGTACCACCNCAATTACAACAAGTACCACNTGGTGTA
AATGTACACACAATGAAACCACCAGGTTCTTTACAACCAGGTGGCGGTGGTGTCGTTCAA
CCACAAGGTATCGTTCAACCTCAAGGTATCGTACAGCCACAGGGCGGTGTAGTTCAACCA
TCTGCAGGCGGTGCTCCAAAAACAATGTATCAACAACAACAGCAACAACAACAACAAACT
GGTCAACCTGGAGGTCCAATGGGTGTCCAAAGAGGTGGCCATCTACCACCACAACAACAA
CCACAACAACAACAACAACAACCACCACCACAATTCATTCAAGGTATTCCACCCGGTGCT
AATTTAGTCATCTCAAATGGTCCACCCAATCAACCATTTGTATTCCAAGGTGCTCACCCA
CCTTATGCCGTACCACATCCTCAATACCCAATGCCACCCCAAGGTATTCAAGGTGGTAAT
AAAAGATTTTATCAACCACCACCACAAGGTTATCCTCAAGTGCAACCAATGATAATTCCA
CAACAAGGTCAAGTTGTATCTCAAAATTCACCACAACAAGATTCTCCTTCAAATCGTTTA
AATCAACAAGTTCCACCT