CHO769
Library CH
(Link to library)
Clone ID CHO769
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16371-1
Original site URL
Representative seq. ID CHO769P
(Link to Original site)
Representative DNA sequence
>CHO769 (CHO769Q) /CSM/CH/CHO7-C/CHO769Q.Seq.d/
ATTTGTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAA
TAAAAAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAAXXXXXXX
XXXTAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCA
AAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCAACAAATTC
AGGAACNCCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCACCAAAATT
GGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATAAACAACAACTACCTCCACC
ACCACCACAACAAACAAAGAAAACCCAAATGGTATNTCATTTCATGCCAACTGATGAATG
GTTACAAGATATTAAAAAACAATTACCATTAGATAATATNTTAAAAGTTATAACTCATTT
ATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATNTGACGAACAAAAAATCATGGA
CTACTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGACNTC
GTCGTTATCATTCAAATGCTATTACAAAATCTTGGTTCATTGCATACATGTGGTGTATCA
TCTATTTAGAAAATCATTCACCTCCATTATTCCTTCACACAAATATTAAATTATTCCAAG
TTAACAATAAAAATAAAAAAGAAAAAAAAGAAATAAAGAAAAAAAAAATTTTAATAAAAG
TAAAAAATTCAAT
sequence update 2002.10.25
Translated Amino Acid sequence
ici*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---KTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESP
KLGGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVXHFMPTDEWLQDIKKQLPLDNXLKVIT
HLSPQIQGLCTGSGXDEQKIMDYLKMSTIVGIFHNPGPIMTSSLSFKCYYKILVHCIHVV
YHLFRKSFTSIIPSHKY*iips*q*k*krkkrnkekknfnkskkfn


Translated Amino Acid sequence (All Frames)
Frame A:
ici*snyrdq**fnikkikk*KNKNKKEKIKKKKEKK---

---*ny*ww*ssr*infkvkgsk*tny*tsk*ywcntilnkfrnxnyqsffkyntksrit
kigw*wyrlsiihsk*ttttstttttnkenpngxsfhan**mvtry*ktitir*yxksyn
sfittnsrfmhwfgx*rtknhgllenvnncwhfp*prsnndxvviiqmllqnlgslhtcg
vssi*kiihlhysftqilnyskltikikkkkkk*rkkkf**k*kiq

Frame B:
fvynqtieinsnlt*kk*knkkikikkkk*krkkkkk---

---KTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPNQESP
KLGGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVXHFMPTDEWLQDIKKQLPLDNXLKVIT
HLSPQIQGLCTGSGXDEQKIMDYLKMSTIVGIFHNPGPIMTSSLSFKCYYKILVHCIHVV
YHLFRKSFTSIIPSHKY*iips*q*k*krkkrnkekknfnkskkfn

Frame C:
lyiikl*rsivi*hkknkkikk*k*krknkkekrkkk---

---kllmvviikmnqfqsqrfkvnqllniqivlvqhhpqqiqexqlsklfqvqhqiknhq
nwvvmv*tlnhplqinnnylhhhhnkqrkpkwyxiscqlmngykilknnyh*iix*kl*l
iyhhkfkvyalvrdxtnkkswtt*kcqqllafsitqvq**xrryhsnaitkswfiaymwc
iiylenhspplflhtniklfqvnnknkkekkeikkkkilikvkns

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO769 (CHO769Q) /CSM/CH/CHO7-C/CHO769Q.Seq.d/ 1170 0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/ 1144 0.0
SHH382 (SHH382Q) /CSM/SH/SHH3-D/SHH382Q.Seq.d/ 1144 0.0
SHD882 (SHD882Q) /CSM/SH/SHD8-D/SHD882Q.Seq.d/ 1144 0.0
SHD356 (SHD356Q) /CSM/SH/SHD3-C/SHD356Q.Seq.d/ 1144 0.0
CHQ792 (CHQ792Q) /CSM/CH/CHQ7-D/CHQ792Q.Seq.d/ 1144 0.0
CHI878 (CHI878Q) /CSM/CH/CHI8-D/CHI878Q.Seq.d/ 1144 0.0
CHI857 (CHI857Q) /CSM/CH/CHI8-C/CHI857Q.Seq.d/ 1144 0.0
CHD619 (CHD619Q) /CSM/CH/CHD6-A/CHD619Q.Seq.d/ 1144 0.0
AHM685 (AHM685Q) /CSM/AH/AHM6-D/AHM685Q.Seq.d/ 1144 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC124060|AC124060.3 Homo sapiens chromosome 8 clone RP11-65D13 map 8, WORKING DRAFT SEQUENCE. 50 6e-05 2
AC139351|AC139351.4 Mus musculus BAC clone RP24-156K15 from 8, complete sequence. 56 0.001 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 0.003 14
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence. 54 0.004 1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence. 54 0.004 1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence. 54 0.004 1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence. 54 0.004 1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence. 54 0.004 1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence. 54 0.004 1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 0.013 13
dna update 2005. 9. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr... 51 5e-14
AB171620_1(AB171620|pid:none) Macaca fascicularis brain cDNA clo... 50 5e-14
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A... 50 1e-13
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI... 50 1e-13
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho... 50 1e-13
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ... 50 1e-13
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet... 50 1e-13
AK050531_1(AK050531|pid:none) Mus musculus adult pancreas islet ... 50 1e-13
BC150166_1(BC150166|pid:none) Xenopus laevis hypothetical protei... 51 3e-13
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA... 49 4e-13
protein update 2009. 4.10
PSORT

psg: 0.24 gvh: 0.31 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for CHO769 is cyt

5' end seq. ID CHO769F
5' end seq.
>CHO769F.Seq
ATTTGTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAA
TAAAAAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 123
3' end seq. ID CHO769Z
3' end seq.
>CHO769Z.Seq
NNNNNNNNNNTAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAA
AGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCAA
CAAATTCAGGAACNCCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCAC
CAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATAAACAACAACTAC
CTCCACCACCACCACAACAAACAAAGAAAACCCAAATGGTATNTCATTTCATGCCAACTG
ATGAATGGTTACAAGATATTAAAAAACAATTACCATTAGATAATATNTTAAAAGTTATAA
CTCATTTATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATNTGACGAACAAAAAA
TCATGGACTACTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAA
TGACNTCGTCGTTATCATTCAAATGCTATTACAAAATCTTGGTTCATTGCATACATGTGG
TGTATCATCTATTTAGAAAATCATTCACCTCCATTATTCCTTCACACAAATATTAAATTA
TTCCAAGTTAACAATAAAAATAAAAAAGAAAAAAAAGAAATAAAGAAAAAAAAAATTTTA
ATAAAAGTAAAAAATTCAAT
Length of 3' end seq. 680
Connected seq. ID CHO769P
Connected seq.
>CHO769P.Seq
ATTTGTATATAATCAAACTATAGAGATCAATAGTAATTTAACATAAAAAAAATAAAAAAA
TAAAAAAATAAAAATAAAAAAGAAAAAATAAAAAAGAAAAAAGAAAAAAAAAA-------
---TAAAACTACTGATGGTGGTGATCATCAAGATGAATCAATTTCAAAGTCAAAGGTTCA
AAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAACACCATCCTCAACAAATTC
AGGAACNCCAACTATCAAAGCTTTTTCAAGTACAACACCAAATCAAGAATCACCAAAATT
GGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATAAACAACAACTACCTCCACC
ACCACCACAACAAACAAAGAAAACCCAAATGGTATNTCATTTCATGCCAACTGATGAATG
GTTACAAGATATTAAAAAACAATTACCATTAGATAATATNTTAAAAGTTATAACTCATTT
ATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATNTGACGAACAAAAAATCATGGA
CTACTTGAAAATGTCAACAATTGTTGGCATTTTCCATAACCCAGGTCCAATAATGACNTC
GTCGTTATCATTCAAATGCTATTACAAAATCTTGGTTCATTGCATACATGTGGTGTATCA
TCTATTTAGAAAATCATTCACCTCCATTATTCCTTCACACAAATATTAAATTATTCCAAG
TTAACAATAAAAATAAAAAAGAAAAAAAAGAAATAAAGAAAAAAAAAATTTTAATAAAAG
TAAAAAATTCAAT
Length of connected seq. 783
Full length Seq ID -
Full length Seq. -
Length of full length seq. -