AFH148
Library AF
(Link to library)
Clone ID AFH148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16593-1
Original site URL
Representative seq. ID AFH148Z
(Link to Original site)
Representative DNA sequence
>AFH148 (AFH148Q) /CSM/AF/AFH1-B/AFH148Q.Seq.d/
XXXXXXXXXXCCCAGTCAAAGATCAAGGTATTTGCGGTTCATGTTGGACTTTTGGTTCAA
CTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTCCCTCTCTGAAC
AACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGGTGGTTTTGCAT
CATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTCCAACTATCCAT
ACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGGTGTTTCAATCA
CTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGCTATCGCCACCA
CTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTACTACATGTCTG
GTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCACGAAGTTTTAG
CTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAACTCTTGGTCAA
CTAACTGGGGTATG
sequence update 2001. 6. 2
Translated Amino Acid sequence
---PVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFAS
SAFQYVMEIGSLATESNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATT
GPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWST
NWGM


Translated Amino Acid sequence (All Frames)
Frame A:
---PVKDQGICGSCWTFGSTGSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFAS
SAFQYVMEIGSLATESNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATT
GPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWST
NWGM


Frame B:
---qskikvfavhvgllvqlvh*kvptvsptvn*spslnnn*livlslpvvkvvvvvlhh
lhsntswklvvsppsptiht*ckmvsaeielslhqvfqslvtsmlplvvnlpfktlsppl
vqspspsmpllmisvttclvftiiqpvkmv*miwitkf*llvmvlikvkiis*lktlgql
tgv


Frame C:
---sqrsrylrfmldfwfnwfirryqlchqr*islpl*ttis*lcypyr*srlwwwfcii
cipirhgnw*srhrvqlsilnakwslqr*nchsircfnhwlrqcylw**icpskryrhhw
ssrhrhrclc**fpllhvwclq*ssl*kwfr*fgsrsfsywlwylsrsrlfls*kllvn*
lgy


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO640 (VFO640Q) /CSM/VF/VFO6-B/VFO640Q.Seq.d/ 1078 0.0
VFO148 (VFO148Q) /CSM/VF/VFO1-B/VFO148Q.Seq.d/ 1078 0.0
VFI581 (VFI581Q) /CSM/VF/VFI5-D/VFI581Q.Seq.d/ 1078 0.0
SFL481 (SFL481Q) /CSM/SF/SFL4-D/SFL481Q.Seq.d/ 1078 0.0
SFE845 (SFE845Q) /CSM/SF/SFE8-B/SFE845Q.Seq.d/ 1078 0.0
CFA108 (CFA108Q) /CSM/CF/CFA1-A/CFA108Q.Seq.d/ 1078 0.0
AFN696 (AFN696Q) /CSM/AF/AFN6-D/AFN696Q.Seq.d/ 1078 0.0
AFJ360 (AFJ360Q) /CSM/AF/AFJ3-C/AFJ360Q.Seq.d/ 1078 0.0
AFH148 (AFH148Q) /CSM/AF/AFH1-B/AFH148Q.Seq.d/ 1078 0.0
AFE529 (AFE529Q) /CSM/AF/AFE5-B/AFE529Q.Seq.d/ 1078 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

S58669|S58669.1 Entamoeba histolytica cysteine proteinase precursor (ACP1) gene, partial cds. 54 2e-06 2
AZ547119|AZ547119.1 ENTFS26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 2e-06 2
AZ674505|AZ674505.1 ENTIZ88TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 54 2e-06 2
X87214|X87214.1 E.histolytica mRNA for cysteine proteinase. 54 3e-06 2
X87213|X87213.1 E.dispar mRNA for cysteine proteinase. 54 1e-04 2
M27307|M27307.1 Entamoeba histolytica cysteine protease gene, partial cds. 54 0.002 1
BQ834906|BQ834906.1 Po_ad_04H08_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_04H08 5' similar to O46030 CYSTEINE PROTEINASE. Sitophilus zeamais (maize weevil), mRNA sequence. 42 0.005 3
CD463608|CD463608.1 ETH1_45_A02.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_45_A02_A002 5', mRNA sequence. 42 0.009 2
AZ531249|AZ531249.1 ENTCA05TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 40 0.019 2
AF326781|AF326781.1 Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia. 40 0.058 2
dna update 2004. 3.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 199 4e-50
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 197 1e-49
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,... 194 1e-48
AF147207_1(AF147207|pid:none) Artemia franciscana cathepsin L-li... 193 2e-48
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr... 193 2e-48
AF194426_1(AF194426|pid:none) Myxine glutinosa clone hicl20 cyst... 192 4e-48
DQ459303_1(DQ459303|pid:none) Aedes aegypti cathepsin L (CAT-L1)... 191 8e-48
(P13277) RecName: Full=Digestive cysteine proteinase 1; ... 191 1e-47
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik... 191 1e-47
EF670319_1(EF670319|pid:none) Artemia persimilis cathepsin L-1 (... 190 2e-47
protein update 2009. 4.21
PSORT

psg: 0.92 gvh: 0.59 alm: 0.42 top: 0.33 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for AFH148 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFH148Z
3' end seq.
>AFH148Z.Seq
----------CCCAGTCAAAGATCAAGGTATTTGCGGTTCATGTTGGACTTTTGGTTCAA
CTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTCCCTCTCTGAAC
AACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGGTGGTTTTGCAT
CATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTCCAACTATCCAT
ACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGGTGTTTCAATCA
CTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGCTATCGCCACCA
CTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTACTACATGTCTG
GTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCACGAAGTTTTAG
CTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAACTCTTGGTCAA
CTAACTGGGGTATG
Length of 3' end seq. 544
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -