CHO739
Library CH
(Link to library)
Clone ID CHO739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11129-1
Original site URL
Representative seq. ID CHO739P
(Link to Original site)
Representative DNA sequence
>CHO739 (CHO739Q) /CSM/CH/CHO7-B/CHO739Q.Seq.d/
AATAGCAAAAGAAAAATGGCAACAAAAAAATACATCTCCTTATGAGATTGAATATGCAAA
GAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTAT
TGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAA
ATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTG
GGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATC
AGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTAT
TGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGT
TGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCG
TCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCA
ATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAG
ATXXXXXXXXXXAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTCA
CTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAGT
CAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGAG
AATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCAT
GGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACCA
TCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAGT
AAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATGT
GAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACCA
CATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCAT
CCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTCTC
TCAACTTCATGTACTCACAATGAATTCATTGTNTATAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
IAKEKWQQKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLK
CKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSI
ADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQ
CKGWISGFTKCDWKGDSIER---

---GNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti*nqylcsrysft*ere*
k*tfhslgkr*e*itlmaw**vn*fridclagikncsticsknwlqiw*rylfc*ly**i
iqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*yksfrygcssqrw*sss
f*f*wfsstir*nfkdwslnfmysq*ihcx*n


Translated Amino Acid sequence (All Frames)
Frame A:
nskrkmatkkyisl*d*icke**inmfnlskry**rsssywl*nkiktl*wngcimasfk
m*mststiiyrfnslgipslgrpiin*nnlffi*kv*skisirgtkreifkgimgs*r*y
cr*legtsn*khhsi**rlc**gitssftsysl*ldvkrssr*msnl*efrytfqwyris
m*rldfrfhkm*ler*fn*k---

---rvt*lkinilhskpnslpldkdsvvyktlvdyvansqdkqfrtnicvqdilsleren
eserftpwakdknrlllwhgsrltnfvsivsqglriappsapktgyrfgkgiyfadcisk
sfsycftssdcptalmllcevslgdmnelkhdtymeeaphpfhstkalgmaaphkdgnhp
lsdsdglvvplgkisktglstscthnefivyk

Frame B:
IAKEKWQQKNTSPYEIEYAKSDRSTCSTCQRGINKEAVRIGYKTKSKHFDGMDVSWHHLK
CKCPQVPSFTDLIHWEYLRWEDQLSIKTTYFSSEKYDPKSASEVQREKYLKALWEVKDSI
ADNLKGPAIKNIIQYNKGYVDKVSPVHLLHTLSDWMLKGRPGRCPTCKNFDILFNGIEYQ
CKGWISGFTKCDWKGDSIER---

---g*hd*ksiyytqnqthshlikiv*fikpw*imlpivkinnlepisvfkiffhlrerm
kvnvsllgqkiridysygmvvg*lisyrlsrrd*ellhhllqklvtdlvkvfillivlvn
hsaivshqvivqlhlcyyvkfhlvt*mn*nmipiwkrhhihsivqkl*vwllltkmviil
flilmv**yh*vkfqrlvsqlhvltmnslxik

Frame C:
*qkkngnkkihllmrlnmqrvidqhvqpvkevlikkqfvlvikqnqntlmewmyhgii*n
vnvhkyhhlqi*ftgntfvgktnyqlkqlifhlksmiqnqhqrykerni*rhygklkivl
pit*rdqqlktsfniikvmliryhqfiyfilsligc*kvvqvdvqlvrisiyfsmvsnin
vkvgfqvsqnvigkviqlkd---

---GNMIENQYITLKTKLTPT**r*csl*nlgrlccq*sr*ti*nqylcsrysft*ere*
k*tfhslgkr*e*itlmaw**vn*fridclagikncsticsknwlqiw*rylfc*ly**i
iqllfhik*lsnctyvim*sftw*he*iet*ylygrgttsip*yksfrygcssqrw*sss
f*f*wfsstir*nfkdwslnfmysq*ihcx*n

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO739 (CHO739Q) /CSM/CH/CHO7-B/CHO739Q.Seq.d/ 2353 0.0
VHB303 (VHB303Q) /CSM/VH/VHB3-A/VHB303Q.Seq.d/ 1241 0.0
SHD815 (SHD815Q) /CSM/SH/SHD8-A/SHD815Q.Seq.d/ 1241 0.0
CHQ835 (CHQ835Q) /CSM/CH/CHQ8-B/CHQ835Q.Seq.d/ 1241 0.0
CHO775 (CHO775Q) /CSM/CH/CHO7-D/CHO775Q.Seq.d/ 1241 0.0
CHI483 (CHI483Q) /CSM/CH/CHI4-D/CHI483Q.Seq.d/ 1241 0.0
AHF461 (AHF461Q) /CSM/AH/AHF4-C/AHF461Q.Seq.d/ 1241 0.0
AHB712 (AHB712Q) /CSM/AH/AHB7-A/AHB712Q.Seq.d/ 1241 0.0
AHA817 (AHA817Q) /CSM/AH/AHA8-A/AHA817Q.Seq.d/ 1241 0.0
AHR444 (AHR444Q) /CSM/AH/AHR4-B/AHR444Q.Seq.d/ 1235 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 1140 0.0 2
AJ520099|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 62 2e-14 3
CQ870481|CQ870481.1 Sequence 902 from Patent WO2004074320. 36 0.004 13
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.014 26
AE016967|AE016967.1 Mycoplasma gallisepticum strain R section 1 of 4 of the complete genome. 36 0.024 13
AC106674|AC106674.4 Rattus norvegicus clone CH230-108D18, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 38 0.052 11
AC139644|AC139644.1 Rattus norvegicus clone CH230-401P15, WORKING DRAFT SEQUENCE, 30 unordered pieces. 40 0.059 5
BX927159|BX927159.10 Zebrafish DNA sequence from clone DKEY-17C23 in linkage group 17. 38 0.089 7
DU047104|DU047104.1 152001 Tomato HindIII BAC Library Lycopersicon esculentum genomic clone LE_HBa0024I07 5, genomic survey sequence. 40 0.11 3
AC148335|AC148335.4 Mus musculus BAC clone RP23-103H10 from chromosome 10, complete sequence. 38 0.22 9
dna update 2005. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

PDBF(1A26) MOL_ID: 1; MOLECULE: POLY (ADP-RIBOSE) POLYMERASE; CH... 172 2e-41
X65497_1(X65497|pid:none) R.norvegicus mRNA for poly(ADP-ribose)... 172 2e-41
(P26446) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 172 2e-41
(P27008) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 172 2e-41
AK303340_1(AK303340|pid:none) Homo sapiens cDNA FLJ53442 complet... 171 5e-41
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 171 6e-41
AK312339_1(AK312339|pid:none) Homo sapiens cDNA, FLJ92658, highl... 170 8e-41
J03473_1(J03473|pid:none) Human poly(ADP-ribose) synthetase mRNA... 170 8e-41
AB384394_1(AB384394|pid:none) Synthetic construct DNA, clone: pF... 170 8e-41
M17081_1(M17081|pid:none) Human placental poly(ADP-ribose) polym... 170 8e-41
protein update 2009. 4.10
PSORT

psg: 0.58 gvh: 0.23 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for CHO739 is nuc

5' end seq. ID CHO739F
5' end seq.
>CHO739F.Seq
AATAGCAAAAGAAAAATGGCAACAAAAAAATACATCTCCTTATGAGATTGAATATGCAAA
GAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTAT
TGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAA
ATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTG
GGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATC
AGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTAT
TGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGT
TGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCG
TCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCA
ATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAG
ATNNNNNNNNNN
Length of 5' end seq. 612
3' end seq. ID CHO739Z
3' end seq.
>CHO739Z.Seq
NNNNNNNNNNAGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTCACT
CCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAGTCA
AGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGAGAA
TGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCATGG
TAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACCATC
TGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAGTAA
ATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATGTGA
AGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACCACA
TCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCATCC
TCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTCTCTC
AACTTCATGTACTCACAATGAATTCATTGTNTATAAAAT
Length of 3' end seq. 639
Connected seq. ID CHO739P
Connected seq.
>CHO739P.Seq
AATAGCAAAAGAAAAATGGCAACAAAAAAATACATCTCCTTATGAGATTGAATATGCAAA
GAGTGATAGATCAACATGTTCAACCTGTCAAAGAGGTATTAATAAAGAAGCAGTTCGTAT
TGGTTATAAAACAAAATCAAAACACTTTGATGGAATGGATGTATCATGGCATCATTTAAA
ATGTAAATGTCCACAAGTACCATCATTTACAGATTTAATTCACTGGGAATACCTTCGTTG
GGAAGACCAATTATCAATTAAAACAACTTATTTTTCATCTGAAAAGTATGATCCAAAATC
AGCATCAGAGGTACAAAGAGAGAAATATTTAAAGGCATTATGGGAAGTTAAAGATAGTAT
TGCCGATAACTTGAAGGGACCAGCAATTAAAAACATCATTCAATATAATAAAGGTTATGT
TGATAAGGTATCACCAGTTCATTTACTTCATACTCTCTCTGATTGGATGTTAAAAGGTCG
TCCAGGTAGATGTCCAACTTGTAAGAATTTCGATATACTTTTCAATGGTATCGAATATCA
ATGTAAAGGTTGGATTTCAGGTTTCACAAAATGTGATTGGAAAGGTGATTCAATTGAAAG
AT----------AGGGTAACATGATTGAAAATCAATATATTACACTCAAAACCAAACTCA
CTCCCACTTGATAAAGATAGTGTAGTTTATAAAACCTTGGTAGATTATGTTGCCAATAGT
CAAGATAAACAATTTAGAACCAATATCTGTGTTCAAGATATTCTTTCACTTGAGAGAGAG
AATGAAAGTGAACGTTTCACTCCTTGGGCAAAAGATAAGAATAGATTACTCTTATGGCAT
GGTAGTAGGTTAACTAATTTCGTATCGATTGTCTCGCAGGGATTAAGAATTGCTCCACCA
TCTGCTCCAAAAACTGGTTACAGATTTGGTAAAGGTATTTATTTTGCTGATTGTATTAGT
AAATCATTCAGCTATTGTTTCACATCAAGTGATTGTCCAACTGCACTTATGTTATTATGT
GAAGTTTCACTTGGTGACATGAATGAATTGAAACATGATACCTATATGGAAGAGGCACCA
CATCCATTCCATAGTACAAAAGCTTTAGGTATGGCTGCTCCTCACAAAGATGGTAATCAT
CCTCTTTCTGATTCTGATGGTTTAGTAGTACCATTAGGTAAAATTTCAAAGACTGGTCTC
TCAACTTCATGTACTCACAATGAATTCATTGTNTATAAAAT
Length of connected seq. 1231
Full length Seq ID -
Full length Seq. -
Length of full length seq. -