CHO734
Library CH
(Link to library)
Clone ID CHO734
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16427-1
Original site URL
Representative seq. ID CHO734P
(Link to Original site)
Representative DNA sequence
>CHO734 (CHO734Q) /CSM/CH/CHO7-B/CHO734Q.Seq.d/
TGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAATA
AAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATTA
GATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGATC
CAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAATA
ATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCAC
AAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAAG
AATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAAG
GTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATTG
ATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAATG
ATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATTCAAAXXXXXX
XXXXTTTCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTCCTTTC
ATTGAATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTCTATTT
ACCAATCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGATCTTGG
TCCATTCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAATGTAT
GTACACTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTTTCATT
ATGTGATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATGATCAT
TCGTTTAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTTGAACC
ACTTCGTGTTATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATCGAACG
TAATGAAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATTCCAAA
TAGTGATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAACTCCATT
AGCTGCTCAATTNATTCAATTTT
sequence update 2002.10.25
Translated Amino Acid sequence
*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMDP
TYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKEE
LVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILND
LLQKYGSFMIGDLENIQ---

---FLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVYLPILYNNAKIKPELIREVD
LGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVSLCDGLKDTQYDIKLLCHLM
IIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQIERNEECIRSALRAVASISRI
PNSDSIVKFEEFVKNTIRTTPLAAQXIQF


Translated Amino Acid sequence (All Frames)
Frame A:
cdcvvcvfwlihiiyiyntikchff*drf*krwvpsikildswqlmilqmn*kkillkwi
qlmkikllqny*h*qliqqimfkkmllnv*vy*lkelkihkqqkllihyqkif*knqikk
n*lkfqvlv*kqslqiyqvkvvqfql**lki*yqny*lvlivkn*kikmklkchv*if*m
iyyksmdhl*lei*rifk---

---FLSLLHDGDLIVRRSALLSLNYIAHNKPNLIRNDLSVYLPILYNNAKIKPELIREVD
LGPFKHKVDDGIEIRKTAFECMYTLLDTSIDKIDVAPFIVSLCDGLKDTQYDIKLLCHLM
IIRLANSNGAALLENITLLLEPLRVILMTKVNETAVKQQIERNEECIRSALRAVASISRI
PNSDSIVKFEEFVKNTIRTTPLAAQXIQF

Frame B:
vivlcvyfg*ytlyiyiiq*nviffrtdfrkdgfhr*ry*ihgns*sck*irkryf*ngs
nl*k*ncykiisins*fsk*csrkcc*mfrfin*ks*rftsnrny*yiikkyfrrik*rr
is*nfrywfknnhykftk*r*fnfnfsn*kfstkiinwy***kikr*k*n*nvmfryfk*
fitkvwiiydwrfreys---

---ffhsymmvi*lldvvpsfh*itlltinqisfvmislsiyqscttmlksnqnsfvkli
lvhsnirsmmvlksekqlsnvctlfwiplsirsm*lhssfhyvmvskipntisncyvi**
sfv*qtqmvllsskillsslnhfvlfs*lk*mkpllnnksnvmknvfvqlyvlslpslef
qivivslnlknllkiqfvqlh*llnxfnf

Frame C:
*lccvcilvdthyiyi*YNKMSFFLGQILEKMGSIDKDIRFMATHDLANELEKDTFKMDP
TYENKIVTKLLALTADSANNVQENVVKCLGLLIKRVKDSQATEIIDTLSKNILEESNKEE
LVEISGIGLKTIITNLPSEGSSISTLVIKNLVPKLLIGIDSEKLKDKNEIKMSCLDILND
LLQKYGSFMIGDLENIQ---

---sftlt*w*fnc*t*cppfielhcsq*tkshs**slclftnlvqqc*nqtrths*s*s
wsiqt*gr*wy*nqknsfrmyvhsfgylyr*drcssihrfim*wsqrypiryqivmsfnd
hsfsklkwccsprkyyspp*ttscyshd*sk*nrc*ttnrt**rmysfsftccrfhl*ns
k***yr*i*ric*kynsynsiscsixsi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO734 (CHO734Q) /CSM/CH/CHO7-B/CHO734Q.Seq.d/ 1334 0.0
SHE847 (SHE847Q) /CSM/SH/SHE8-B/SHE847Q.Seq.d/ 1215 0.0
CHG727 (CHG727Q) /CSM/CH/CHG7-B/CHG727Q.Seq.d/ 1215 0.0
AFL359 (AFL359Q) /CSM/AF/AFL3-C/AFL359Q.Seq.d/ 1215 0.0
CHO121 (CHO121Q) /CSM/CH/CHO1-A/CHO121Q.Seq.d/ 1213 0.0
VHQ485 (VHQ485Q) /CSM/VH/VHQ4-D/VHQ485Q.Seq.d/ 1201 0.0
VHO482 (VHO482Q) /CSM/VH/VHO4-D/VHO482Q.Seq.d/ 1201 0.0
VHC193 (VHC193Q) /CSM/VH/VHC1-D/VHC193Q.Seq.d/ 1201 0.0
VHB862 (VHB862Q) /CSM/VH/VHB8-C/VHB862Q.Seq.d/ 1201 0.0
SHL726 (SHL726Q) /CSM/SH/SHL7-B/SHL726Q.Seq.d/ 1201 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 1199 0.0 16
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 2e-09 31
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 36 3e-09 32
AE009951|AE009951.2 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome. 34 1e-06 26
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 38 6e-06 26
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 36 8e-06 22
AR409405|AR409405.1 Sequence 1 from patent US 6632935. 36 8e-06 22
BA000003|BA000003.2 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence. 36 8e-06 22
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 40 1e-05 13
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 2e-05 28
dna update 2005. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86KD1) RecName: Full=Cullin-associated NEDD8-dissociated prote... 367 e-100
BC004232_1(BC004232|pid:none) Homo sapiens cullin-associated and... 178 4e-43
AK001791_1(AK001791|pid:none) Homo sapiens cDNA FLJ10929 fis, cl... 178 4e-43
AB179357_1(AB179357|pid:none) Macaca fascicularis testis cDNA cl... 178 4e-43
BC026220_1(BC026220|pid:none) Homo sapiens cullin-associated and... 178 4e-43
AB020636_1(AB020636|pid:none) Homo sapiens mRNA for KIAA0829 pro... 178 4e-43
AK292456_1(AK292456|pid:none) Homo sapiens cDNA FLJ77762 complet... 178 4e-43
AL833880_1(AL833880|pid:none) Homo sapiens mRNA; cDNA DKFZp434P1... 178 4e-43
(A7MBJ5) RecName: Full=Cullin-associated NEDD8-dissociated prote... 178 4e-43
BT068509_1(BT068509|pid:none) Zea mays full-length cDNA clone ZM... 177 5e-43
protein update 2009. 4.10
PSORT

psg: 0.90 gvh: 0.44 alm: 0.36 top: 0.40 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum

>> prediction for CHO734 is cyt

5' end seq. ID CHO734F
5' end seq.
>CHO734F.Seq
TGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAATA
AAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATTA
GATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGATC
CAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAATA
ATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCAC
AAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAAG
AATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAAG
GTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATTG
ATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAATG
ATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATTCAAANNNNNN
NNNN
Length of 5' end seq. 604
3' end seq. ID CHO734Z
3' end seq.
>CHO734Z.Seq
NNNNNNNNNNTTTCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCT
CCTTTCATTGAATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGT
CTATTTACCAATCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGA
TCTTGGTCCATTCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGA
ATGTATGTACACTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGT
TTCATTATGTGATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAAT
GATCATTCGTTTAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCT
TGAACCACTTCGTGTTATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAAT
CGAACGTAATGAAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAAT
TCCAAATAGTGATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAAC
TCCATTAGCTGCTCAATTNATTCAATTTT
Length of 3' end seq. 629
Connected seq. ID CHO734P
Connected seq.
>CHO734P.Seq
TGTGATTGTGTTGTGTGTGTATTTTGGTTGATACACATTATATATATATATAATACAATA
AAATGTCATTTTTTTTAGGACAGATTTTAGAAAAGATGGGTTCCATCGATAAAGATATTA
GATTCATGGCAACTCATGATCTTGCAAATGAATTAGAAAAAGATACTTTTAAAATGGATC
CAACTTATGAAAATAAAATTGTTACAAAATTATTAGCATTAACAGCTGATTCAGCAAATA
ATGTTCAAGAAAATGTTGTTAAATGTTTAGGTTTATTAATTAAAAGAGTTAAAGATTCAC
AAGCAACAGAAATTATTGATACATTATCAAAAAATATTTTAGAAGAATCAAATAAAGAAG
AATTAGTTGAAATTTCAGGTATTGGTTTAAAAACAATCATTACAAATTTACCAAGTGAAG
GTAGTTCAATTTCAACTTTAGTAATTAAAAATTTAGTACCAAAATTATTAATTGGTATTG
ATAGTGAAAAATTAAAAGATAAAAATGAAATTAAAATGTCATGTTTAGATATTTTAAATG
ATTTATTACAAAAGTATGGATCATTTATGATTGGAGATTTAGAGAATATTCAAA------
----TTTCTTTCACTCTTACATGATGGTGATTTAATTGTTAGACGTAGTGCCCTCCTTTC
ATTGAATTACATTGCTCACAATAAACCAAATCTCATTCGTAATGATCTCTCTGTCTATTT
ACCAATCTTGTACAACAATGCTAAAATCAAACCAGAACTCATTCGTGAAGTTGATCTTGG
TCCATTCAAACATAAGGTCGATGATGGTATTGAAATCAGAAAAACAGCTTTCGAATGTAT
GTACACTCTTTTGGATACCTCTATCGATAAGATCGATGTAGCTCCATTCATCGTTTCATT
ATGTGATGGTCTCAAAGATACCCAATACGATATCAAATTGTTATGTCATTTAATGATCAT
TCGTTTAGCAAACTCAAATGGTGCTGCTCTCCTCGAAAATATTACTCTCCTCCTTGAACC
ACTTCGTGTTATTCTCATGACTAAAGTAAATGAAACCGCTGTTAAACAACAAATCGAACG
TAATGAAGAATGTATTCGTTCAGCTTTACGTGCTGTCGCTTCCATCTCTAGAATTCCAAA
TAGTGATAGTATCGTTAAATTTGAAGAATTTGTTAAAAATACAATTCGTACAACTCCATT
AGCTGCTCAATTNATTCAATTTT
Length of connected seq. 1213
Full length Seq ID -
Full length Seq. -
Length of full length seq. -