>CHO654 (CHO654Q) /CSM/CH/CHO6-C/CHO654Q.Seq.d/
XXXXXXXXXXTTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGA
TTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATT
TCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAACAT
CAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGT
TGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAG
ACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAAT
TGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCA
AATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCA
ACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGA
AGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCA
ATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACA
ACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAA
TGTGAACAACAAATCGTNAACAACTTAAAGTATCAAAGAATTTCAAAGACAAG

---QDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLNDANDNFEQVNNNNNNIN
NNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIE
RQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
NNKSXTT*sikefqrq

Frame A:
---skmtiimiklkn*kmmiiilminkltmvnlkimlknfli*mmlmiilnkltttttts
iiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkkl
kdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmk
lpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqm
*ttnrxqlkvsknfkdk


Frame B:
---pr*ls**sn*rikr**l*f**stn*qwsi*k*c*ris*fk*c***f*ts*qqqqqhq
***q*ql*s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*fqfe*sssrg*rn*
kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*s
clfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc
eqqivnnlkyqriskt


Frame C:
---QDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLNDANDNFEQVNNNNNNIN
NNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIE
RQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEV
AFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNV
NNKSXTT*sikefqrq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/                        946   0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/                        946   0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/                        946   0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/                        946   0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/                        946   0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/                        946   0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/                        946   0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/                        946   0.0
CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/                        946   0.0
CHO654 (CHO654Q) /CSM/CH/CHO6-C/CHO654Q.Seq.d/                        946   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   946   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  12
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    40   5e-11  29
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          40   8e-09  25
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   2e-07  22
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   4e-07  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-05  14
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    36   1e-05  13
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36   2e-05  13
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   2e-05  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   352   9e-96
(Q23MT7) RecName: Full=Probable beta-tubulin polyglutamylase;   ...    47   7e-04
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    44   0.006
AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    44   0.007
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    44   0.007
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    42   0.016
AL034558_21(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    42   0.021
CR855913_1(CR855913|pid:none) Paramecium tetraurelia macronuclea...    42   0.027
AE014187_536(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.036
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    41   0.047

 psg: 0.75  gvh: -0.01  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHO654 is nuc

>CHO654Z.Seq
NNNNNNNNNNTTCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGA
TTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATT
TCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAACAT
CAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGT
TGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAG
ACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAAT
TGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCA
AATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCA
ACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGA
AGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCA
ATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACA
ACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAA
TGTGAACAACAAATCGTNAACAACTTAAAGTATCAAAGAATTTCAAAGACAAG