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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO586
Library CH
(Link to library)
Clone ID CHO586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11594-1|Contig-U15357-1
Original site URL
Representative seq. ID CHO586P
(Link to Original site)
Representative DNA sequence 
>CHO586 (CHO586Q) /CSM/CH/CHO5-D/CHO586Q.Seq.d/
TTTAAAAATAAAAAAATTAATAAAAAAAGCTATTATTTATGGTTTTATAATAGAAACATT
TGGTTATTAATTTTTGTTATTAACAAAATTAATAAATTAATAATTAATATATAAATGTAT
CAACAACAACCAAAAAATCAAAAACAATGTAAAAATATTGCACTACATGGTTATTGTCGA
AATAGTGATAAATGCGAATTTAGTCACGAATTAACACCTCAGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAAAATTCXXXXXXXXXXATTTGATGTGGTGAATTTCGATAC
TCCACGTATTTTAGCACAGTATCAACATGAAGATCTATTGTTATTTGGTAGATTAATATT
GACATTGGCATGTAGATCCGCTCAATCAACTACTACTACCAATCTTTCGAAATCAATCGA
ATATGTATCAAATCAGTATAGTAAAGAATTGTATAATCTAATTGTATATCTATTAACCAA
ACCAGTTATAAACCTACCAAATATCGATGAAGTGGTGTTGATGATTAGTGGAAGACTTTT
GCAAGAGAATAATTATCTTCATACCTACACTGATGACCTCGAGACTGAACTCTCTAAAGA
ATATGAGAATGGTCGTCTCTTTAGATTGGTTACAAAGTTGGGTTTCATCAATGAACGTCC
ACTCTATGATATGGATCCACGTTGGTCTGAAACTGGTGATAGGTATCTAATCAAATTGTT
TCGTGACTACATCTTTCATCAAGTCTACGATGATGGTACTCCTGTGCTCGACTTTTACCA
TGTTGTTGAAACCCTCAATAAATTGGATTGTGGTGTCGATTAAAAAATACTTTTAATGTC
TAGAGATGAACAATCACTTTTGGTAGTCAGTTATAAAGATTTAAAAAAATGTATAGACTC
GCTNTTTCAGAATGGTCTCTCAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
fknkkinkksyylwfynrniwllifvinkinkliini*MYQQQPKNQKQCKNIALHGYCR
NSDKCEFSHELTPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQN---

---FDVVNFDTPRILAQYQHEDLLLFGRLILTLACRSAQSTTTTNLSKSIEYVSNQYSKE
LYNLIVYLLTKPVINLPNIDEVVLMISGRLLQENNYLHTYTDDLETELSKEYENGRLFRL
VTKLGFINERPLYDMDPRWSETGDRYLIKLFRDYIFHQVYDDGTPVLDFYHVVETLNKLD
CGVD*killmsrdeqsllvvsykdlkkcidslfqnglsk
Translated Amino Acid sequence (All Frames) 
Frame A:
fknkkinkksyylwfynrniwllifvinkinkliini*MYQQQPKNQKQCKNIALHGYCR
NSDKCEFSHELTPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQN---

---i*cgefrystyfstvst*rsiviw*inidigm*irsinyyyqsfeinriciksv**r
iv*sncisinqtsykptkyr*sgvdd*wktfare*lssylh**prd*tl*ri*ewssl*i
gykvgfhq*tstl*ygstlv*nw**vsnqivs*lhlssslr*wyscarllpcc*npq*ig
lwcrlkntfnv*r*titfgsql*rfkkmyrlaxsewslk

Frame B:
lkikklikkaiiygfiietfgy*fllltklin**liykcinnnqkiknnvkilhymvive
ivinanlvtn*hlsnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnki---

---FDVVNFDTPRILAQYQHEDLLLFGRLILTLACRSAQSTTTTNLSKSIEYVSNQYSKE
LYNLIVYLLTKPVINLPNIDEVVLMISGRLLQENNYLHTYTDDLETELSKEYENGRLFRL
VTKLGFINERPLYDMDPRWSETGDRYLIKLFRDYIFHQVYDDGTPVLDFYHVVETLNKLD
CGVD*killmsrdeqsllvvsykdlkkcidslfqnglsk

Frame C:
*k*kn**kkllfmvl**khlvinfcy*qn**inn*yinvstttkksktm*kycttwllsk
***mri*srintsattttttttttttttttttttttttttttttttkf---

---lmw*isilhvf*hsinmkiycylvd*y*hwhvdplnqlllpifrnqsnmyqisivkn
cii*lyiy*pnql*tyqismkwc**lvedfckriiifiptlmtsrlnslknmrmvvsldw
lqswvssmnvhsmiwihvglklvigi*sncfvttsfikstmmvllcstftmllkpsinwi
vvsikkyf*clemnnhfw*sviki*knv*trxfrmvsqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO586 (CHO586Q) /CSM/CH/CHO5-D/CHO586Q.Seq.d/                       1241   0.0
CFH392 (CFH392Q) /CSM/CF/CFH3-D/CFH392Q.Seq.d/                       1183   0.0
SHE679 (SHE679Q) /CSM/SH/SHE6-D/SHE679Q.Seq.d/                       1168   0.0
CHP878 (CHP878Q) /CSM/CH/CHP8-D/CHP878Q.Seq.d/                       1156   0.0
VHJ326 (VHJ326Q) /CSM/VH/VHJ3-B/VHJ326Q.Seq.d/                       1150   0.0
CHL362 (CHL362Q) /CSM/CH/CHL3-C/CHL362Q.Seq.d/                       1114   0.0
AHB142 (AHB142Q) /CSM/AH/AHB1-B/AHB142Q.Seq.d/                       1114   0.0
CHR381 (CHR381Q) /CSM/CH/CHR3-D/CHR381Q.Seq.d/                       1074   0.0
AHG777 (AHG777Q) /CSM/AH/AHG7-D/AHG777Q.Seq.d/                       1055   0.0
VHM623 (VHM623Q) /CSM/VH/VHM6-A/VHM623Q.Seq.d/                        971   0.0
own update 2002.10. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC111771|AC111771.4 Rattus norvegicus clone CH230-163P12, WORKING DRAFT SEQUENCE, 5unordered pieces.    48   0.33   1
AC095032|AC095032.3 Homo sapiens chromosome 1 clone RP11-153F1, complete sequence.    40   1.3    4
AC079259|AC079259.3 Homo sapiens chromosome 18 clone RP11-433A23, WORKING DRAFT SEQUENCE, 28 unordered pieces.    46   1.3    1
AC096865|AC096865.2 Homo sapiens chromosome 18 clone RP11-600G22, complete sequence.    46   1.3    1
CW288999|CW288999.1 104_767_11412246_148_35538_019 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11412246, genomic survey sequence.    46   1.3    1
AC091646|AC091646.6 Homo sapiens chromosome 18, clone RP11-433A23, complete sequence.    46   1.3    1
AC160330|AC160330.2 Bos taurus clone CH240-31E8, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44   5.1    1
AC151646|AC151646.2 Dasypus novemcinctus clone VMRC5-242D2, WORKING DRAFT SEQUENCE, 3 ordered pieces.    44   5.1    1
AY673996|AY673996.1 Gracilaria tenuistipitata var. liui chloroplast, complete genome.    34   9.7    9
dna update 2005. 8.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128180_1(BC128180|pid:none) Homo sapiens PAN3 polyA specific r...   206   9e-52
BC128179_1(BC128179|pid:none) Homo sapiens PAN3 polyA specific r...   206   9e-52
(Q640Q5) RecName: Full=PAB-dependent poly(A)-specific ribonuclea...   206   9e-52
AK012409_1(AK012409|pid:none) Mus musculus 11 days embryo whole ...   206   9e-52
BX647740_1(BX647740|pid:none) Homo sapiens mRNA; cDNA DKFZp686K1...   206   9e-52
BC082547_1(BC082547|pid:none) Mus musculus PAN3 polyA specific r...   206   9e-52
(Q5T516) RecName: Full=PAB-dependent poly(A)-specific ribonuclea...   206   9e-52
BC086321_1(BC086321|pid:none) Mus musculus PAN3 polyA specific r...   206   9e-52
AB109552_1(AB109552|pid:none) Homo sapiens PAN3b mRNA for PABP1-...   203   6e-51
AE014296_588(AE014296|pid:none) Drosophila melanogaster chromoso...   194   3e-48
protein update 2009. 4.10
PSORT 

 psg: 0.64  gvh: 0.25  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 20.0 %: cytoplasmic
	 20.0 %: plasma membrane
	 20.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for CHO586 is cyt
5' end seq. ID CHO586F
5' end seq. 
>CHO586F.Seq
TTTAAAAATAAAAAAATTAATAAAAAAAGCTATTATTTATGGTTTTATAATAGAAACATT
TGGTTATTAATTTTTGTTATTAACAAAATTAATAAATTAATAATTAATATATAAATGTAT
CAACAACAACCAAAAAATCAAAAACAATGTAAAAATATTGCACTACATGGTTATTGTCGA
AATAGTGATAAATGCGAATTTAGTCACGAATTAACACCTCAGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAAAATTCNNNNNNNNNN
Length of 5' end seq. 336
3' end seq. ID CHO586Z
3' end seq. 
>CHO586Z.Seq
NNNNNNNNNNATTTGATGTGGTGAATTTCGATACTCCACGTATTTTAGCACAGTATCAAC
ATGAAGATCTATTGTTATTTGGTAGATTAATATTGACATTGGCATGTAGATCCGCTCAAT
CAACTACTACTACCAATCTTTCGAAATCAATCGAATATGTATCAAATCAGTATAGTAAAG
AATTGTATAATCTAATTGTATATCTATTAACCAAACCAGTTATAAACCTACCAAATATCG
ATGAAGTGGTGTTGATGATTAGTGGAAGACTTTTGCAAGAGAATAATTATCTTCATACCT
ACACTGATGACCTCGAGACTGAACTCTCTAAAGAATATGAGAATGGTCGTCTCTTTAGAT
TGGTTACAAAGTTGGGTTTCATCAATGAACGTCCACTCTATGATATGGATCCACGTTGGT
CTGAAACTGGTGATAGGTATCTAATCAAATTGTTTCGTGACTACATCTTTCATCAAGTCT
ACGATGATGGTACTCCTGTGCTCGACTTTTACCATGTTGTTGAAACCCTCAATAAATTGG
ATTGTGGTGTCGATTAAAAAATACTTTTAATGTCTAGAGATGAACAATCACTTTTGGTAG
TCAGTTATAAAGATTTAAAAAAATGTATAGACTCGCTNTTTCAGAATGGTCTCTCAAAAA
Length of 3' end seq. 660
Connected seq. ID CHO586P
Connected seq. 
>CHO586P.Seq
TTTAAAAATAAAAAAATTAATAAAAAAAGCTATTATTTATGGTTTTATAATAGAAACATT
TGGTTATTAATTTTTGTTATTAACAAAATTAATAAATTAATAATTAATATATAAATGTAT
CAACAACAACCAAAAAATCAAAAACAATGTAAAAATATTGCACTACATGGTTATTGTCGA
AATAGTGATAAATGCGAATTTAGTCACGAATTAACACCTCAGCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAAAATTC----------ATTTGATGTGGTGAATTTCGATAC
TCCACGTATTTTAGCACAGTATCAACATGAAGATCTATTGTTATTTGGTAGATTAATATT
GACATTGGCATGTAGATCCGCTCAATCAACTACTACTACCAATCTTTCGAAATCAATCGA
ATATGTATCAAATCAGTATAGTAAAGAATTGTATAATCTAATTGTATATCTATTAACCAA
ACCAGTTATAAACCTACCAAATATCGATGAAGTGGTGTTGATGATTAGTGGAAGACTTTT
GCAAGAGAATAATTATCTTCATACCTACACTGATGACCTCGAGACTGAACTCTCTAAAGA
ATATGAGAATGGTCGTCTCTTTAGATTGGTTACAAAGTTGGGTTTCATCAATGAACGTCC
ACTCTATGATATGGATCCACGTTGGTCTGAAACTGGTGATAGGTATCTAATCAAATTGTT
TCGTGACTACATCTTTCATCAAGTCTACGATGATGGTACTCCTGTGCTCGACTTTTACCA
TGTTGTTGAAACCCTCAATAAATTGGATTGTGGTGTCGATTAAAAAATACTTTTAATGTC
TAGAGATGAACAATCACTTTTGGTAGTCAGTTATAAAGATTTAAAAAAATGTATAGACTC
GCTNTTTCAGAATGGTCTCTCAAAAA
Length of connected seq. 976
Full length Seq ID -
Full length Seq. -
Length of full length seq. -