>CHO570 (CHO570Q) /CSM/CH/CHO5-C/CHO570Q.Seq.d/
AAATTATTTGTGTGTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTGTTTTGTAT
TTATTCCTGTAATTAATTATTTTTATTTTATTTTATTTTTTTTAAAGATGGTTTTTGAAA
ATGGAAATTCAGGTAATGTTAAAAAGACAATCACCTCACCAAATAAATCAATAAATGGCC
AAAATCATTTTAATAAAGTGATTAAATCAACAACATCACCAATTAAAAGTACAATACCAA
CATTATCAAAAACTCAATCATCAACTTATTTCAAAGATTTAGATTCATTAAATAAAAAGA
ATGAAAATTCCTCATCCTCTGAAGTTAAATCATTGGCATCATTTTATGAAAAATTAGCAA
ATAGTTCAAAACCAAGTACACCATCCATCAAAAAGAAATCACCAATTAAATTATCATCAT
CATCACAAAAATCAACAACAAATAATAATAATAATAATAATAATAATAATAATAGTCAAC
CAATTTCAACAGCTAAAAGATTATCAATTCAAAAACAACAACAAAAAAAAGATCAAGAAG
AAAAAGAATTCCAAAAGAGACAACAAGAAAAAGAAAAAGAAAAAGAAGAAAAGGAANAAG
AAATTTTAAAACAXXXXXXXXXXATCATTTTNCNCAACAACATNAGNATNAACATCAGNA
TNAACATCAGGAACATTTGCAANAGTTGGAAAGAAACCNATACCACGTGGTTTATCAACA
ACNCCNATTAAATCATTATCATCATCATCATTGNTATCATTGGCAGCAAATAATAANGCA
AAGTCAAATGGNAACTTTGGTATTGTAACNCCNAATNAATTATNATNATCNACAGNTGGT
AAAAGA

IICVFLFVCFVLFCFVCFVFIPVINYFYFILFFLKMVFENGNSGNVKKTITSPNKSINGQ
NHFNKVIKSTTSPIKSTIPTLSKTQSSTYFKDLDSLNKKNENSSSSEVKSLASFYEKLAN
SSKPSTPSIKKKSPIKLSSSSQKSTTNNNNNNNNNNNSQPISTAKRLSIQKQQQKKDQEE
KEFQKRQQEKEKEKEEKEXEILK---

---SFXXTTXXXTSXXTSGTFAXVGKKPIPRGLSTTPIKSLSSSSLXSLAANNXAKSNGN
FGIVTPNXLXXSTXGKR

Frame A:
klfvcfclfvlfcfvlfvlylfl*liifilfyff*rwflkmeiqvmlkrqsphqinq*ma
kiilik*lnqqhhqlkvqyqhyqklnhqliski*ih*ikrmkiphplklnhwhhfmkn*q
ivqnqvhhpskrnhqlnyhhhhknqqqiiiiiiiiiiivnqfqqlkdyqfknnnkkkikk
kknskrdnkkkkkkkkkrxkkf*n---

---iixxnnxxxnixxnirnicxswketxttwfinnxx*iiiiiiixiigsk**xkvkwx
lwycnxxxixxixxw*k

Frame B:
nylcvfvclfcfvlfclfciyscn*lflfyfiffkdgf*kwkfr*c*kdnhltk*inkwp
ksf**sd*innitn*kyntniiknsiinlfqrfrfik*ke*kflil*s*iigiil*kisk
*fktkytihqkeitn*iiiiitkinnk***********stnfns*kiinsktttkkrsrr
kripkettrkrkrkrrkgxrnfkt---

---SFXXTTXXXTSXXTSGTFAXVGKKPIPRGLSTTPIKSLSSSSLXSLAANNXAKSNGN
FGIVTPNXLXXSTXGKR

Frame C:
IICVFLFVCFVLFCFVCFVFIPVINYFYFILFFLKMVFENGNSGNVKKTITSPNKSINGQ
NHFNKVIKSTTSPIKSTIPTLSKTQSSTYFKDLDSLNKKNENSSSSEVKSLASFYEKLAN
SSKPSTPSIKKKSPIKLSSSSQKSTTNNNNNNNNNNNSQPISTAKRLSIQKQQQKKDQEE
KEFQKRQQEKEKEKEEKEXEILK---

---hfxqqhxxxhqxxhqehlqxlernxyhvvyqqxxlnhyhhhhxyhwqqiixqsqmxt
lvl*xxxnyxxxqxvk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO570 (CHO570Q) /CSM/CH/CHO5-C/CHO570Q.Seq.d/                        668   0.0
CHN819 (CHN819Q) /CSM/CH/CHN8-A/CHN819Q.Seq.d/                        668   0.0
AHO566 (AHO566Q) /CSM/AH/AHO5-C/AHO566Q.Seq.d/                        668   0.0
AHE372 (AHE372Q) /CSM/AH/AHE3-C/AHE372Q.Seq.d/                        668   0.0
VHM275 (VHM275Q) /CSM/VH/VHM2-D/VHM275Q.Seq.d/                        285   5e-76
AFK777 (AFK777Q) /CSM/AF/AFK7-D/AFK777Q.Seq.d/                        285   5e-76
AFH146 (AFH146Q) /CSM/AF/AFH1-B/AFH146Q.Seq.d/                        285   5e-76
AHO771 (AHO771Q) /CSM/AH/AHO7-C/AHO771Q.Seq.d/                        278   1e-73
SSM802 (SSM802Q) /CSM/SS/SSM8-A/SSM802Q.Seq.d/                         46   9e-04
VSJ367 (VSJ367Q) /CSM/VS/VSJ3-C/VSJ367Q.Seq.d/                         42   0.014

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   5e-08  19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   6e-08  18
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    40   1e-06  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   2e-06  13
AL954144|AL954144.6 Zebrafish DNA sequence from clone CH211-206L15.    42   9e-06  9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    42   1e-05  12
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    42   1e-05  15
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   1e-05  13
Y11204|Y11204.1 V.carteri gene encoding volvoxopsin.               42   2e-05  3
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42   3e-05  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_53(AC117075|pid:none) Dictyostelium discoideum chromoso...    39   0.16
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.60
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs...    37   0.60
(P36417) RecName: Full=G-box-binding factor;          Short=GBF;       37   1.0
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    35   2.3
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    34   5.0
AY056469_1(AY056469|pid:none) Petromyzon marinus homeobox protei...    34   5.0
CP000628_859(CP000628|pid:none) Agrobacterium radiobacter K84 ch...    34   5.0
AM999238_1(AM999238|pid:none) Drosophila melanogaster CG9571 gen...    33   8.6

 psg: 1.00  gvh: 0.66  alm: 0.25  top: 0.60  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHO570 is exc

>CHO570F.Seq
AAATTATTTGTGTGTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTGTTTTGTAT
TTATTCCTGTAATTAATTATTTTTATTTTATTTTATTTTTTTTAAAGATGGTTTTTGAAA
ATGGAAATTCAGGTAATGTTAAAAAGACAATCACCTCACCAAATAAATCAATAAATGGCC
AAAATCATTTTAATAAAGTGATTAAATCAACAACATCACCAATTAAAAGTACAATACCAA
CATTATCAAAAACTCAATCATCAACTTATTTCAAAGATTTAGATTCATTAAATAAAAAGA
ATGAAAATTCCTCATCCTCTGAAGTTAAATCATTGGCATCATTTTATGAAAAATTAGCAA
ATAGTTCAAAACCAAGTACACCATCCATCAAAAAGAAATCACCAATTAAATTATCATCAT
CATCACAAAAATCAACAACAAATAATAATAATAATAATAATAATAATAATAATAGTCAAC
CAATTTCAACAGCTAAAAGATTATCAATTCAAAAACAACAACAAAAAAAAGATCAAGAAG
AAAAAGAATTCCAAAAGAGACAACAAGAAAAAGAAAAAGAAAAAGAAGAAAAGGAANAAG
AAATTTTAAAACANNNNNNNNNN

>CHO570Z.Seq
NNNNNNNNNNATCATTTTNCNCAACAACATNAGNATNAACATCAGNATNAACATCAGGAA
CATTTGCAANAGTTGGAAAGAAACCNATACCACGTGGTTTATCAACAACNCCNATTAAAT
CATTATCATCATCATCATTGNTATCATTGGCAGCAAATAATAANGCAAAGTCAAATGGNA
ACTTTGGTATTGTAACNCCNAATNAATTATNATNATCNACAGNTGGTAAAAGA

>CHO570P.Seq
AAATTATTTGTGTGTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTGTTTTGTAT
TTATTCCTGTAATTAATTATTTTTATTTTATTTTATTTTTTTTAAAGATGGTTTTTGAAA
ATGGAAATTCAGGTAATGTTAAAAAGACAATCACCTCACCAAATAAATCAATAAATGGCC
AAAATCATTTTAATAAAGTGATTAAATCAACAACATCACCAATTAAAAGTACAATACCAA
CATTATCAAAAACTCAATCATCAACTTATTTCAAAGATTTAGATTCATTAAATAAAAAGA
ATGAAAATTCCTCATCCTCTGAAGTTAAATCATTGGCATCATTTTATGAAAAATTAGCAA
ATAGTTCAAAACCAAGTACACCATCCATCAAAAAGAAATCACCAATTAAATTATCATCAT
CATCACAAAAATCAACAACAAATAATAATAATAATAATAATAATAATAATAATAGTCAAC
CAATTTCAACAGCTAAAAGATTATCAATTCAAAAACAACAACAAAAAAAAGATCAAGAAG
AAAAAGAATTCCAAAAGAGACAACAAGAAAAAGAAAAAGAAAAAGAAGAAAAGGAANAAG
AAATTTTAAAACA----------ATCATTTTNCNCAACAACATNAGNATNAACATCAGNA
TNAACATCAGGAACATTTGCAANAGTTGGAAAGAAACCNATACCACGTGGTTTATCAACA
ACNCCNATTAAATCATTATCATCATCATCATTGNTATCATTGGCAGCAAATAATAANGCA
AAGTCAAATGGNAACTTTGGTATTGTAACNCCNAATNAATTATNATNATCNACAGNTGGT
AAAAGA