>CHO559 (CHO559Q) /CSM/CH/CHO5-C/CHO559Q.Seq.d/
XXXXXXXXXXGACCAGTTGAGTAGTTTAGTATTGATGATTGTCCAATTCGCTCAGTTTGT
TTGTTTTTACACTTATGATGTTTACAGACNTGAGCATAGTGGAGGGTGTATTCGATATGC
ACGTTATTTCAATCCATTCATATCTGGTTTACCAGCATATTGCCGTCTAATGCAATGTTT
CAGACGTTACTATGACAGTTATGACAGCACCACTGGTAAGGGTGACACTGTACATCTCAG
AAATGCCGTTAAATATTCATTATCAATTGTAGTGGTGGTTTGCTCAACTTTGGATGGTTT
CTTCTCTGGTGACAGTGGTTGGCATTCACCATATAGATTAATTTGGGTAGTTGCAGGTGT
ATCGAATTCAATGTATTCCTATTGGTGGGATTTAATATGTGATTGGAGTATTGTAGTTAG
ACCAAAAGGTCAACATTGGAACCCATTCAAATGGACTCTTAGAAAGAGAAGAATGTATCA
ACCTACCTTTGTTTACTATTTTGCAATCTTTTCAAATCTTGGATTTAGAACAACTTGGAC
CTTTACAAAATCATTACCACAATTAACAAACATTTTACCATCTTATAAATTAGTTGTCGT
AATTGGTATTATTGAAATCCAACAAGAGGTCAANNCAATATTTTTAG

---QLSSLVLMIVQFAQFVCFYTYDVYRXEHSGGCIRYARYFNPFISGLPAYCRLMQCFR
RYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSPYRLIWVVAGVS
NSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIFSNLGFRTTWTF
TKSLPQLTNILPSYKLVVVIGIIEIQQEVXXIFL

Frame A:
---ts*vv*y**lsnslslfvftlmmftdxsivegvfdmhvisihsylvyqhiav*cnvs
dvtmtvmtaplvrvtlyisemplnihyql*wwfaqlwmvsslvtvvgihhid*fg*lqvy
riqcipiggi*yvigvl*ldqkvnigthsngllereecinlplftilqsfqildleqlgp
lqnhyhn*qtfyhlin*ls*lvllksnkrsxqyf*


Frame B:
---pve*fsiddcpirsvclflhl*clqt*a*wrvysictlfqsihiwftsilpsnamfq
tll*ql*qhhw*g*hctsqkcr*ifiincsggllnfgwfllw*qwlafti*inlgscrci
efnvfllvgfnm*leycs*tkrstlepiqmds*keknvstylcllfcnlfkswi*nnldl
ykiittinkhftil*iscrnwyy*nptrgqxnif


Frame C:
---QLSSLVLMIVQFAQFVCFYTYDVYRXEHSGGCIRYARYFNPFISGLPAYCRLMQCFR
RYYDSYDSTTGKGDTVHLRNAVKYSLSIVVVVCSTLDGFFSGDSGWHSPYRLIWVVAGVS
NSMYSYWWDLICDWSIVVRPKGQHWNPFKWTLRKRRMYQPTFVYYFAIFSNLGFRTTWTF
TKSLPQLTNILPSYKLVVVIGIIEIQQEVXXIFL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO559 (CHO559Q) /CSM/CH/CHO5-C/CHO559Q.Seq.d/                       1245   0.0
SHE354 (SHE354Q) /CSM/SH/SHE3-C/SHE354Q.Seq.d/                       1229   0.0
AHM814 (AHM814Q) /CSM/AH/AHM8-A/AHM814Q.Seq.d/                       1215   0.0
AHF236 (AHF236Q) /CSM/AH/AHF2-B/AHF236Q.Seq.d/                       1207   0.0
AFE195 (AFE195Q) /CSM/AF/AFE1-D/AFE195Q.Seq.d/                       1195   0.0
AFL747 (AFL747Q) /CSM/AF/AFL7-B/AFL747Q.Seq.d/                       1191   0.0
SHG186 (SHG186Q) /CSM/SH/SHG1-D/SHG186Q.Seq.d/                       1185   0.0
AHQ140 (AHQ140Q) /CSM/AH/AHQ1-B/AHQ140Q.Seq.d/                       1130   0.0
AHA718 (AHA718Q) /CSM/AH/AHA7-A/AHA718Q.Seq.d/                        307   1e-82
VSJ355 (VSJ355Q) /CSM/VS/VSJ3-C/VSJ355Q.Seq.d/                         34   2.5

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC167101|AC167101.1 Sorex araneus clone SA_Ba-311I10, WORKING DRAFT SEQUENCE.    38   0.27   7
AL954657|AL954657.14 Zebrafish DNA sequence from clone CH211-223E21 in linkage group 4  Contains three CpG islands.    42   0.36   3
AL663107|AL663107.13 Mouse DNA sequence from clone RP23-465K20 on chromosome 11.    38   0.40   5
AC073162|AC073162.9 Homo sapiens chromosome 10 clone RP11-536J24, complete sequence.    40   0.62   6
BH548606|BH548606.1 BOGRW54TF BOGR Brassica oleracea genomic clone BOGRW54, DNA sequence.    46   0.85   1
CC952299|CC952299.1 BOICA11TR BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOICA11, genomic survey sequence.    46   0.85   1
AC146693|AC146693.13 Medicago truncatula clone mth2-104c7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38   0.86   5
AC137661|AC137661.2 Gallus gallus clone TAM33-80P12, WORKING DRAFT SEQUENCE, 7 unordered pieces.    32   0.98   8
AC106047|AC106047.5 Homo sapiens BAC clone RP11-293A21 from 4, complete sequence.    44   1.3    4
AG594055|AG594055.1 Mus musculus molossinus DNA, clone:MSMg01-523N08.TJ, genomic survey sequence.    40   1.6    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G02) RecName: Full=SPX and EXS domain-containing protein 5;       417   e-115
AK065252_1(AK065252|pid:none) Oryza sativa Japonica Group cDNA c...    91   3e-17
AP008218_1271(AP008218|pid:none) Oryza sativa (japonica cultivar...    91   3e-17
AM910993_419(AM910993|pid:none) Plasmodium knowlesi strain H chr...    89   1e-16
EU970262_1(EU970262|pid:none) Zea mays clone 342824 EXS, C-termi...    88   2e-16
(A8DZH4) RecName: Full=Xenotropic and polytropic retrovirus rece...    87   4e-16
AL844505_73(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    84   3e-15
AL133058_1(AL133058|pid:none) Homo sapiens mRNA; cDNA DKFZp434K0...    82   1e-14
AL137583_1(AL137583|pid:none) Homo sapiens mRNA; cDNA DKFZp434F1...    82   1e-14
(Q9TU72) RecName: Full=Xenotropic and polytropic retrovirus rece...    81   2e-14

 psg: 0.95  gvh: 0.46  alm: 0.29  top: 0.50  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 24.0 %: nuclear
	 20.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHO559 is end

>CHO559Z.Seq
NNNNNNNNNNGACCAGTTGAGTAGTTTAGTATTGATGATTGTCCAATTCGCTCAGTTTGT
TTGTTTTTACACTTATGATGTTTACAGACNTGAGCATAGTGGAGGGTGTATTCGATATGC
ACGTTATTTCAATCCATTCATATCTGGTTTACCAGCATATTGCCGTCTAATGCAATGTTT
CAGACGTTACTATGACAGTTATGACAGCACCACTGGTAAGGGTGACACTGTACATCTCAG
AAATGCCGTTAAATATTCATTATCAATTGTAGTGGTGGTTTGCTCAACTTTGGATGGTTT
CTTCTCTGGTGACAGTGGTTGGCATTCACCATATAGATTAATTTGGGTAGTTGCAGGTGT
ATCGAATTCAATGTATTCCTATTGGTGGGATTTAATATGTGATTGGAGTATTGTAGTTAG
ACCAAAAGGTCAACATTGGAACCCATTCAAATGGACTCTTAGAAAGAGAAGAATGTATCA
ACCTACCTTTGTTTACTATTTTGCAATCTTTTCAAATCTTGGATTTAGAACAACTTGGAC
CTTTACAAAATCATTACCACAATTAACAAACATTTTACCATCTTATAAATTAGTTGTCGT
AATTGGTATTATTGAAATCCAACAAGAGGTCAANNCAATATTTTTAG