CHO553
Library CH
(Link to library)
Clone ID CHO553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15936-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHO553 (CHO553Q) /CSM/CH/CHO5-C/CHO553Q.Seq.d/
CGCAATCATTATTTGGAACTAAGTCAACTGAAACCAAATCTGATGACCCAATGTCGCTTA
AAGAAATGTCAAATACAATTCAAGATAATGATGATCAAAATTCAGATTCAGAATCACATG
AAGAATTAGAATCAGGATCAGAAGAAGAAGAAGAACAACAACAACAACCAAAAGTTACAT
TGTTATCATCTTCATTTACTCCCCCATCATTTGCTCCTCCATCATTTGCTCCATCATCAT
TTGCTCCATCATCATTTGCTCCTCCATCATTTGCTCCTCCATCATTTGCTCCATCATCAT
TTGCTCCATCATCATTTGCTCCTCCATCATTTGCTCCTCCAAAACCTGAAAATACATCAA
CACCAACATCATCAATCTTTGGATCATTTAGTTCTCAACCAAGTGGTGGTGGTATTTCAG
CATTTGGACCAGTTTCTAGTAATTCATCATCTCCATTTGGAAGTGGTTTCGGTTXXXXXX
XXXX
sequence update 2002.10.25
Translated Amino Acid sequence
QSLFGTKSTETKSDDPMSLKEMSNTIQDNDDQNSDSESHEELESGSEEEEEQQQQPKVTL
LSSSFTPPSFAPPSFAPSSFAPSSFAPPSFAPPSFAPSSFAPSSFAPPSFAPPKPENTST
PTSSIFGSFSSQPSGGGISAFGPVSSNSSSPFGSGFG---


Translated Amino Acid sequence (All Frames)
Frame A:
rnhylelsqlkpnlmtqcrlkkcqiqfkimmikiqiqnhmkn*nqdqkkkknnnnnqklh
cyhlhllphhlllhhllhhhllhhhlllhhlllhhllhhhllhhhlllhhlllqnlkihq
hqhhqsldhlvlnqvvvvfqhldqflvihhlhlevvs---


Frame B:
aiiiwn*vn*nqi**pnva*rnvkynsr***skfrfrit*riririrrrrrtttttksyi
viifiyspiicssiicsiiicsiiicssiicssiicsiiicsiiicssiicsskt*kyin
tniinlwii*fstkwwwyfsiwtsf**fiisiwkwfr---


Frame C:
QSLFGTKSTETKSDDPMSLKEMSNTIQDNDDQNSDSESHEELESGSEEEEEQQQQPKVTL
LSSSFTPPSFAPPSFAPSSFAPSSFAPPSFAPPSFAPSSFAPSSFAPPSFAPPKPENTST
PTSSIFGSFSSQPSGGGISAFGPVSSNSSSPFGSGFG---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHL287 (SHL287Q) /CSM/SH/SHL2-D/SHL287Q.Seq.d/ 381 e-105
CHO553 (CHO553Q) /CSM/CH/CHO5-C/CHO553Q.Seq.d/ 381 e-105
SFJ849 (SFJ849Q) /CSM/SF/SFJ8-C/SFJ849Q.Seq.d/ 373 e-102
CHQ138 (CHQ138Q) /CSM/CH/CHQ1-B/CHQ138Q.Seq.d/ 70 3e-11
CFA461 (CFA461Q) /CSM/CF/CFA4-C/CFA461Q.Seq.d/ 52 8e-06
AFL854 (AFL854Q) /CSM/AF/AFL8-C/AFL854Q.Seq.d/ 52 8e-06
AFG537 (AFG537Q) /CSM/AF/AFG5-B/AFG537Q.Seq.d/ 52 8e-06
AFC676 (AFC676Q) /CSM/AF/AFC6-D/AFC676Q.Seq.d/ 52 8e-06
AHP265 (AHP265Q) /CSM/AH/AHP2-C/AHP265Q.Seq.d/ 50 3e-05
SLB654 (SLB654Q) /CSM/SL/SLB6-C/SLB654Q.Seq.d/ 48 1e-04

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 3e-08 10
AL035419|AL035419.12 Human DNA sequence from clone RP5-1100H13 on chromosome 20q11.2 Contains the 3' end of gene KIAA1219, a putative novel gene, a DC5 pseudogene, the gene for a putative RhoGAP domain containing protein, ESTs, STSs, GSSs and two CpG islands. 66 7e-07 1
AC104924|AC104924.4 Mus musculus clone RP24-255J4, LOW-PASS SEQUENCE SAMPLING. 54 8e-07 3
AC095675|AC095675.5 Rattus norvegicus clone CH230-8J15, WORKING DRAFT SEQUENCE, 2 unordered pieces. 58 2e-06 5
AC112288|AC112288.4 Rattus norvegicus clone CH230-105B20, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 64 3e-06 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 ma... 34 3e-06 9
AL773531|AL773531.6 Mouse DNA sequence from clone RP23-179F21 on chromosome 2. 58 3e-06 4
AC145602|AC145602.3 Mus musculus BAC clone RP24-240M7 from chromosome Y, complete sequence. 58 4e-06 3
CR036872|CR036872.1 Reverse strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP373m12. 60 5e-06 2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 7e-06 11
dna update 2005. 8.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 272,918,992
protein update 2009. 4.10
PSORT

psg: 0.53 gvh: 0.29 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHO553 is nuc

5' end seq. ID CHO553F
5' end seq.
>CHO553F.Seq
CGCAATCATTATTTGGAACTAAGTCAACTGAAACCAAATCTGATGACCCAATGTCGCTTA
AAGAAATGTCAAATACAATTCAAGATAATGATGATCAAAATTCAGATTCAGAATCACATG
AAGAATTAGAATCAGGATCAGAAGAAGAAGAAGAACAACAACAACAACCAAAAGTTACAT
TGTTATCATCTTCATTTACTCCCCCATCATTTGCTCCTCCATCATTTGCTCCATCATCAT
TTGCTCCATCATCATTTGCTCCTCCATCATTTGCTCCTCCATCATTTGCTCCATCATCAT
TTGCTCCATCATCATTTGCTCCTCCATCATTTGCTCCTCCAAAACCTGAAAATACATCAA
CACCAACATCATCAATCTTTGGATCATTTAGTTCTCAACCAAGTGGTGGTGGTATTTCAG
CATTTGGACCAGTTTCTAGTAATTCATCATCTCCATTTGGAAGTGGTTTCGGTTNNNNNN
NNNN
Length of 5' end seq. 484
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -