CHO546
Library CH
(Link to library)
Clone ID CHO546
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15543-1
Original site URL
Representative seq. ID CHO546P
(Link to Original site)
Representative DNA sequence
>CHO546 (CHO546Q) /CSM/CH/CHO5-B/CHO546Q.Seq.d/
TAGTAAATTGATGGAGAATTTTCAAGATCCATTGATTCATATTTTATGTGTAGCATTAGT
GATCACGGTGATCTTATCATTTGTAGGATATGCGGAATGGTTTGAGGGTGTTGGTATTGC
ATCAGCAGTATTTTTAGCAACATTTGTATCAACCTATAGTGAATATAAGAATGAGAATTC
ATTTCAAGAACTTCAAGAGAAAGCATCAAGAGTGAAATGTAACGTTTTTAGAAATGGATC
ACACATTTCCGAAGTCTATGGATTCGATGTTGTAGTTGGTGATTTAGTACTCCTTCAAGC
GGGTGATAAGATTCCAGCAGATGGTCGTTTAGTTGCAGGCGAACTTCACGTCAATCAATC
GACCCTCAATGGAGAACCACACCTCGAAAAGAAGATTGTAGCCCCAGAAAACTATGAACC
AACCACCAGAAACGATTTCTTGGATCATTATCTATGTTTTAGAGGTACAGTGGTCGAGGA
TGGTGAAGGTGTACTCTTGGTGTCAGCCCGTTGGTTCATCAACGCTCTATGGTGAACTCG
CTATTGAACTTTCAAAAGCCGATGAAAGAGAATCCCCACTTCAAATTAAATTATCAAATT
TAGCCGATGGTATTAGTACCATTGGTTATATTGGCGXXXXXXXXXXTATGGTAGAACCCA
TTTACAAATCCCATTCAAAAGTTTATCGTTTTCCAATCTACAATCAATGTCGCCTCAACT
CTTATCGTATTCTTGGGACCATTTATGGGCTTTGATTTCCCGTTAACTTTAATTCAATTG
TTATGGGTTAACTTGGTAATGGATACTTTGGCTGCTCTCGCATTTGGTGGTGAACCAGCA
CTCACTCGTTACCATGCAAGAGAAACCCAATCAAAAGAGATCAATCCATTATCACCAGTA
GAATGTGGGGTTCAATTTTAGGTGGAGGTCCTTTCATCTCTGCAATGTCTATTCTTTTCC
TTACCAATGACTATGTTGAAGCTTTCTTCACTCGTAATGGTGAACCATATCAACCAGCTT
TCTTGACTGCATTTTTTGCATTTTTCATTTTCCTCTCTGTCATCAATGCCTTTAACGTTC
GTACTAGCCGTTTGAATCTCTTTGATCATTTGTTTGATAATAAAGGTTTCATTGTAGTTG
TGTTTTTCATTTTCTTTGTTCAAATCGTTTTCACCTATATTGGTGGTAAGATTCTCAGAA
CCGTTGGTCTCACTTCCAGTGAATGGGCTTTGGTTGTAGCAATGTCCTTCTCAGTAATAC
CTTTTGACCTCATTAGAAAGTTTGCCTTAAATTATTTCTTTTCAAATCAAAGAAAAATAT
CAAAAAACCGATAAAAATTNAAAAAATG
sequence update 2002.10.25
Translated Amino Acid sequence
vn*wrifkih*fifyv*h**sr*syhl*dmrnglrvlvlhqqyf*qhlyqpivnirmrih
fknfkrkhqe*nvtflemdhtfpksmdsml*lvi*ysfkrvirfqqmvv*lqanftsinr
psmenhtskrrl*PQKTMNQPPETISWIIIYVLEVQWSRMVKVYSWCQPVGSSTLYGELA
IELSKADERESPLQIKLSNLADGISTIGYIG---

---YGRTHLQIPFKSLSFSNLQSMSPQLLSYSWDHLWALISR*l*fncygltw*wilwll
shlvvnqhslvtmqekpnqkrsihyhq*nvgfnfrwrsfhlcnvysfpyq*lc*sflhs*
w*tistsfldcifcifhfplchqcl*rsy*pfesl*sfv***rfhcscvfhflcsnrfhl
yww*dsqnrwshfq*mgfgcsnvllsntf*ph*kvclklflfkskknikkpikixkm


Translated Amino Acid sequence (All Frames)
Frame A:
**idgefsrsidsyfmcsisdhgdliicricgmv*gcwycissifsnicinl**i*e*ef
isrtsresiksem*rf*kwithfrslwirccsw*fstpssg**dssrwsfscrrtsrqsi
dpqwrttprkedcsprkl*tnhqkrflgslsmf*rysgrgw*rctlgvsplvhqrsmvns
llnfqkpmkenphfklnyqi*pmvlvplvila---

---YGRTHLQIPFKSLSFSNLQSMSPQLLSYSWDHLWALISR*l*fncygltw*wilwll
shlvvnqhslvtmqekpnqkrsihyhq*nvgfnfrwrsfhlcnvysfpyq*lc*sflhs*
w*tistsfldcifcifhfplchqcl*rsy*pfesl*sfv***rfhcscvfhflcsnrfhl
yww*dsqnrwshfq*mgfgcsnvllsntf*ph*kvclklflfkskknikkpikixkm

Frame B:
sklmenfqdplihilcvalvitvilsfvgyaewfegvgiasavflatfvstyseyknens
fqelqekasrvkcnvfrngshisevygfdvvvgdlvllqagdkipadgrlvagelhvnqs
tlngephlekkivapenyepttrndfldhylcfrgtvvedgegvllvsarwfinalw*tr
y*tfksr*kriptsn*iikfsrwy*yhwlyw---

---mvepiykshskvyrfpiynqcrlnsyrilgtiygl*fpvnfnsivmg*lgngyfgcs
riww*tsthslpckrnpikrdqsiitsrmwgsilgggpfisamsilfltndyveafftrn
gepyqpafltaffaffiflsvinafnvrtsrlnlfdhlfdnkgfivvvffiffvqivfty
iggkilrtvgltssewalvvamsfsvipfdlirkfalnyffsnqrkisknr*kxkk

Frame C:
vn*wrifkih*fifyv*h**sr*syhl*dmrnglrvlvlhqqyf*qhlyqpivnirmrih
fknfkrkhqe*nvtflemdhtfpksmdsml*lvi*ysfkrvirfqqmvv*lqanftsinr
psmenhtskrrl*PQKTMNQPPETISWIIIYVLEVQWSRMVKVYSWCQPVGSSTLYGELA
IELSKADERESPLQIKLSNLADGISTIGYIG---

---w*npftnpiqkfivfqstinvastlivflgpfmgfdfpltliqllwvnlvmdtlaal
afggepaltryharetqskeinplspvecgvqf*vevlsslqclffslpmtmlklsslvm
vnhinqls*lhflhfsfsslssmpltfvlav*isliicliikvsl*lcfsfslfksfspi
lvvrfseplvslpvnglwl*qcpsq*ylltsleslp*iisfqikekyqktdknxkn

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO546 (CHO546Q) /CSM/CH/CHO5-B/CHO546Q.Seq.d/ 1980 0.0
VHG477 (VHG477Q) /CSM/VH/VHG4-D/VHG477Q.Seq.d/ 1199 0.0
FC-BQ24 (FC-BQ24Q) /CSM/FC/FC-BQ/FC-BQ24Q.Seq.d/ 1183 0.0
AHA243 (AHA243Q) /CSM/AH/AHA2-B/AHA243Q.Seq.d/ 1166 0.0
SHL543 (SHL543Q) /CSM/SH/SHL5-B/SHL543Q.Seq.d/ 1160 0.0
AHL305 (AHL305Q) /CSM/AH/AHL3-A/AHL305Q.Seq.d/ 1158 0.0
AHF662 (AHF662Q) /CSM/AH/AHF6-C/AHF662Q.Seq.d/ 1136 0.0
AHJ168 (AHJ168Q) /CSM/AH/AHJ1-C/AHJ168Q.Seq.d/ 1116 0.0
VHE758 (VHE758Q) /CSM/VH/VHE7-C/VHE758Q.Seq.d/ 1112 0.0
AHN621 (AHN621Q) /CSM/AH/AHN6-A/AHN621Q.Seq.d/ 1096 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL403413|AL403413.1 T3 end of clone AT0AA008E05 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii. 56 0.002 1
AC120578|AC120578.5 Rattus norvegicus clone CH230-456E10, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces. 36 0.18 10
AC093841|AC093841.3 Homo sapiens BAC clone RP11-438F11 from 4, complete sequence. 42 0.22 8
AC110953|AC110953.4 Rattus norvegicus clone CH230-64G3, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 0.87 7
AC156801|AC156801.2 Mus musculus BAC clone RP23-142F22 from chromosome 9, complete sequence. 34 1.5 8
AC113714|AC113714.5 Rattus norvegicus clone CH230-58P22, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 1.5 6
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 36 5.2 8
CL381632|CL381632.1 RPCI44_316C21.r RPCI-44 Sus scrofa genomic clone RPCI44_316C21, genomic survey sequence. 38 5.2 2
CN880849|CN880849.1 010305AASA001459HT (AASA) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASA001459, mRNA sequence. 38 5.4 2
AL365332|AL365332.9 Human DNA sequence from clone RP11-212L9 on chromosome 1. 40 5.7 5
dna update 2005. 8.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000419_660(CP000419|pid:none) Streptococcus thermophilus LMD-9... 97 1e-18
CP000024_744(CP000024|pid:none) Streptococcus thermophilus CNRZ1... 97 1e-18
CP000023_731(CP000023|pid:none) Streptococcus thermophilus LMG 1... 97 1e-18
CR626927_4042(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 81 3e-16
AP006841_4337(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 80 6e-16
CP000139_1262(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 69 1e-14
CP000140_2134(CP000140|pid:none) Parabacteroides distasonis ATCC... 71 5e-14
CP000393_4227(CP000393|pid:none) Trichodesmium erythraeum IMS101... 78 8e-13
AM920433_57(AM920433|pid:none) Penicillium chrysogenum Wisconsin... 54 9e-13
AE015924_814(AE015924|pid:none) Porphyromonas gingivalis W83, co... 72 4e-12
protein update 2009. 4.10
PSORT

psg: 0.93 gvh: 0.46 alm: 0.42 top: 0.27 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHO546 is cyt

5' end seq. ID CHO546F
5' end seq.
>CHO546F.Seq
TAGTAAATTGATGGAGAATTTTCAAGATCCATTGATTCATATTTTATGTGTAGCATTAGT
GATCACGGTGATCTTATCATTTGTAGGATATGCGGAATGGTTTGAGGGTGTTGGTATTGC
ATCAGCAGTATTTTTAGCAACATTTGTATCAACCTATAGTGAATATAAGAATGAGAATTC
ATTTCAAGAACTTCAAGAGAAAGCATCAAGAGTGAAATGTAACGTTTTTAGAAATGGATC
ACACATTTCCGAAGTCTATGGATTCGATGTTGTAGTTGGTGATTTAGTACTCCTTCAAGC
GGGTGATAAGATTCCAGCAGATGGTCGTTTAGTTGCAGGCGAACTTCACGTCAATCAATC
GACCCTCAATGGAGAACCACACCTCGAAAAGAAGATTGTAGCCCCAGAAAACTATGAACC
AACCACCAGAAACGATTTCTTGGATCATTATCTATGTTTTAGAGGTACAGTGGTCGAGGA
TGGTGAAGGTGTACTCTTGGTGTCAGCCCGTTGGTTCATCAACGCTCTATGGTGAACTCG
CTATTGAACTTTCAAAAGCCGATGAAAGAGAATCCCCACTTCAAATTAAATTATCAAATT
TAGCCGATGGTATTAGTACCATTGGTTATATTGGCGNNNNNNNNNN
Length of 5' end seq. 646
3' end seq. ID CHO546Z
3' end seq.
>CHO546Z.Seq
NNNNNNNNNNTATGGTAGAACCCATTTACAAATCCCATTCAAAAGTTTATCGTTTTCCAA
TCTACAATCAATGTCGCCTCAACTCTTATCGTATTCTTGGGACCATTTATGGGCTTTGAT
TTCCCGTTAACTTTAATTCAATTGTTATGGGTTAACTTGGTAATGGATACTTTGGCTGCT
CTCGCATTTGGTGGTGAACCAGCACTCACTCGTTACCATGCAAGAGAAACCCAATCAAAA
GAGATCAATCCATTATCACCAGTAGAATGTGGGGTTCAATTTTAGGTGGAGGTCCTTTCA
TCTCTGCAATGTCTATTCTTTTCCTTACCAATGACTATGTTGAAGCTTTCTTCACTCGTA
ATGGTGAACCATATCAACCAGCTTTCTTGACTGCATTTTTTGCATTTTTCATTTTCCTCT
CTGTCATCAATGCCTTTAACGTTCGTACTAGCCGTTTGAATCTCTTTGATCATTTGTTTG
ATAATAAAGGTTTCATTGTAGTTGTGTTTTTCATTTTCTTTGTTCAAATCGTTTTCACCT
ATATTGGTGGTAAGATTCTCAGAACCGTTGGTCTCACTTCCAGTGAATGGGCTTTGGTTG
TAGCAATGTCCTTCTCAGTAATACCTTTTGACCTCATTAGAAAGTTTGCCTTAAATTATT
TCTTTTCAAATCAAAGAAAAATATCAAAAAACCGATAAAAATTNAAAAAATG
Length of 3' end seq. 712
Connected seq. ID CHO546P
Connected seq.
>CHO546P.Seq
TAGTAAATTGATGGAGAATTTTCAAGATCCATTGATTCATATTTTATGTGTAGCATTAGT
GATCACGGTGATCTTATCATTTGTAGGATATGCGGAATGGTTTGAGGGTGTTGGTATTGC
ATCAGCAGTATTTTTAGCAACATTTGTATCAACCTATAGTGAATATAAGAATGAGAATTC
ATTTCAAGAACTTCAAGAGAAAGCATCAAGAGTGAAATGTAACGTTTTTAGAAATGGATC
ACACATTTCCGAAGTCTATGGATTCGATGTTGTAGTTGGTGATTTAGTACTCCTTCAAGC
GGGTGATAAGATTCCAGCAGATGGTCGTTTAGTTGCAGGCGAACTTCACGTCAATCAATC
GACCCTCAATGGAGAACCACACCTCGAAAAGAAGATTGTAGCCCCAGAAAACTATGAACC
AACCACCAGAAACGATTTCTTGGATCATTATCTATGTTTTAGAGGTACAGTGGTCGAGGA
TGGTGAAGGTGTACTCTTGGTGTCAGCCCGTTGGTTCATCAACGCTCTATGGTGAACTCG
CTATTGAACTTTCAAAAGCCGATGAAAGAGAATCCCCACTTCAAATTAAATTATCAAATT
TAGCCGATGGTATTAGTACCATTGGTTATATTGGCG----------TATGGTAGAACCCA
TTTACAAATCCCATTCAAAAGTTTATCGTTTTCCAATCTACAATCAATGTCGCCTCAACT
CTTATCGTATTCTTGGGACCATTTATGGGCTTTGATTTCCCGTTAACTTTAATTCAATTG
TTATGGGTTAACTTGGTAATGGATACTTTGGCTGCTCTCGCATTTGGTGGTGAACCAGCA
CTCACTCGTTACCATGCAAGAGAAACCCAATCAAAAGAGATCAATCCATTATCACCAGTA
GAATGTGGGGTTCAATTTTAGGTGGAGGTCCTTTCATCTCTGCAATGTCTATTCTTTTCC
TTACCAATGACTATGTTGAAGCTTTCTTCACTCGTAATGGTGAACCATATCAACCAGCTT
TCTTGACTGCATTTTTTGCATTTTTCATTTTCCTCTCTGTCATCAATGCCTTTAACGTTC
GTACTAGCCGTTTGAATCTCTTTGATCATTTGTTTGATAATAAAGGTTTCATTGTAGTTG
TGTTTTTCATTTTCTTTGTTCAAATCGTTTTCACCTATATTGGTGGTAAGATTCTCAGAA
CCGTTGGTCTCACTTCCAGTGAATGGGCTTTGGTTGTAGCAATGTCCTTCTCAGTAATAC
CTTTTGACCTCATTAGAAAGTTTGCCTTAAATTATTTCTTTTCAAATCAAAGAAAAATAT
CAAAAAACCGATAAAAATTNAAAAAATG
Length of connected seq. 1338
Full length Seq ID -
Full length Seq. -
Length of full length seq. -