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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO513
Library CH
(Link to library)
Clone ID CHO513
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11723-1
Original site URL
Representative seq. ID CHO513P
(Link to Original site)
Representative DNA sequence 
>CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/
AAAAAAAAGTTAATGAATTTAGGAAAGAATTATAATATTTTTTTTTTATATAAATTTTAT
ATGGGTTTATAAAANACTGCGTAGGGATAAATAATAATGGAAAGTAATAAATCATCATCA
CATGGANATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAATGGN
GGNGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGGTTCTTATGAAGTT
GGCAAAACTTTAGGTAATGGTNCATTTGGTAAAGTTAAATTAGGTNCAAATATTTGTNCA
AAANAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGGAAANCAAAAAGAA
ACATGTTTTAAANAAATTGATNTTATGAAATTATTANATCATCCAAATATAGNGAAATTA
TTANATGTTGTTGATAAAAGAXXXXXXXXXXCAAATTTAAGAAGAAATTCAATTGCAGTT
TCAACATTTATGGAAGATGAACCAAATGAAATGCCAATTAATAATTTGTATAAAATGAAT
GAACAAATTCAACAACAACCAATTATTGGTGGTAGTGGTAATGTAATGAGATCNCAATTT
AATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCNCCAAAAACGAGAAGA
ATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGGTTGAAAAGAATCAA
CATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAACTACCACTACTAAA
TCACCAGAGAAAACAATTATCGAATTGAAAAGATCTNTCGAAGAAAGTGGTTTATTCACT
AAAAAGAAAGGTCCTTACCTTTTNTTATGTTTTGATGAAGATAACTCTGTTAAATTTCAA
ATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAATTAAAAAGATTAAGT
GGCGATACTTGGAAATATAAAGATATTTGTACTGAATTAGTTGAATCAATGAAATTATAA
GTTTTTTTTTAAAAAAAAAATAAATAGTAATAAATAATAAAAAAATAATAAATAATAAAT
AAAATAAAAATAANAAATAAAATAAAAAAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
kkklmnlgknynifflykfymgl*xta*g*IIMESNKSSSHGXVSTSPSFLNNHHQFNNG
GDIIPKKKKNRIMHVGSYEVGKTLGNGXFGKVKLGXNICXKXNVAIKFIKNNKLSGXQKE
TCFKXIDXMKLLXHPNIXKLLXVVDKR---

---NLRRNSIAVSTFMEDEPNEMPINNLYKMNEQIQQQPIIGGSGNVMRSQFNQTLPTID
QQPVIEAPKTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKXSTTTTKSPEKTIIE
LKRSXEESGLFTKKKGPYLXLCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKD
ICTELVESMKL*vff*kknk***iikk**iinkikixnkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kkklmnlgknynifflykfymgl*xta*g*IIMESNKSSSHGXVSTSPSFLNNHHQFNNG
GDIIPKKKKNRIMHVGSYEVGKTLGNGXFGKVKLGXNICXKXNVAIKFIKNNKLSGXQKE
TCFKXIDXMKLLXHPNIXKLLXVVDKR---

---qi*eeiqlqfqhlwkmnqmkcqliicik*mnkfnnnqllvvvvm**dxnlikhyqql
innqllkxqkree*v*ihvc*mvinnhwlkriniwqvqelrkvylnxqlpllnhqrkqls
n*kdlskkvvyslkrkvltfxyvlmkitllnfkskslkfvtli*lvfn*kd*vailgnik
ifvln*lnq*nykfffkkkinsnk**knnk**ik*k*xik*kkn

Frame B:
kks**i*eriiifffyinfiwvykxlrrdk**wkvinhhhmxmyqllhhf*iiiinlimx
xi*sqkrkkig*cmlvlmklakl*vmvhlvkln*vqifvqxkmlqlnl*kiinyqexkkk
hvlxklxl*nyxiiqi*xnyxmllik---

---kfkkkfncsfniygr*tk*nan**fv*ne*tnstttnyww*w*cneixi*snitnn*
sttsy*sxkneknefrftyvkw*stiig*kestygksknferyi*xfnyhy*itrennyr
iekixrrkwfih*kerslpfxmf**r*lc*isnrnr*nl*p*fnwysikkikwrylei*r
yly*is*ineiisfflkkk*ivinnkkiinnk*nknxk*nkkk

Frame C:
kkvnefrkel*yfffi*ilygfikxcvginnngk**iiitwxcinfsiifk*sssi**wx
xynpkkekk*dnacwfl*swqnfr*wxiw*s*irxkylxkxkccn*iykk**iirkxkrn
mf*xn*xyeiixsskyxeiixcc**k---

---NLRRNSIAVSTFMEDEPNEMPINNLYKMNEQIQQQPIIGGSGNVMRSQFNQTLPTID
QQPVIEAPKTRRMSLDSRMLNGDQQSLVEKNQHMASPRTSKGIFKXSTTTTKSPEKTIIE
LKRSXEESGLFTKKKGPYLXLCFDEDNSVKFQIEIVKICNLDLTGIQLKRLSGDTWKYKD
ICTELVESMKL*vff*kknk***iikk**iinkikixnkikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO513 (CHO513Q) /CSM/CH/CHO5-A/CHO513Q.Seq.d/                       1189   0.0
CHN147 (CHN147Q) /CSM/CH/CHN1-B/CHN147Q.Seq.d/                       1100   0.0
CHF760 (CHF760Q) /CSM/CH/CHF7-C/CHF760Q.Seq.d/                       1096   0.0
CHR195 (CHR195Q) /CSM/CH/CHR1-D/CHR195Q.Seq.d/                       1092   0.0
CHN820 (CHN820Q) /CSM/CH/CHN8-A/CHN820Q.Seq.d/                       1090   0.0
CHH704 (CHH704Q) /CSM/CH/CHH7-A/CHH704Q.Seq.d/                       1072   0.0
CHP810 (CHP810Q) /CSM/CH/CHP8-A/CHP810Q.Seq.d/                       1070   0.0
CHI134 (CHI134Q) /CSM/CH/CHI1-B/CHI134Q.Seq.d/                       1047   0.0
CHO603 (CHO603Q) /CSM/CH/CHO6-A/CHO603Q.Seq.d/                        979   0.0
SLC215 (SLC215Q) /CSM/SL/SLC2-A/SLC215Q.Seq.d/                        718   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-08  19
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   2e-07  19
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   0.001  32
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.002  18
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   0.005  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   0.009  21
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.014  21
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.016  13
AE017243|AE017243.1 Mycoplasma hyopneumoniae J, complete genome.    32   0.017  24
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    36   0.018  15
dna update 2005. 8.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK045329_1(AK045329|pid:none) Mus musculus 9.5 days embryo parth...    63   2e-08
(O08678) RecName: Full=Serine/threonine-protein kinase MARK1;   ...    63   2e-08
U64205_1(U64205|pid:none) Homo sapiens Cdc25C associated protein...    63   2e-08
(Q9P0L2) RecName: Full=Serine/threonine-protein kinase MARK1;   ...    63   2e-08
BX161395_1(BX161395|pid:none) human full-length cDNA clone CS0DC...    63   2e-08
AF465413_1(AF465413|pid:none) Homo sapiens MAP/microtubule affin...    63   2e-08
(Q8VHJ5) RecName: Full=Serine/threonine-protein kinase MARK1;   ...    63   2e-08
BC058556_1(BC058556|pid:none) Mus musculus MAP/microtubule affin...    63   2e-08
BC084772_1(BC084772|pid:none) Xenopus laevis hypothetical LOC495...    63   2e-08
AK172444_1(AK172444|pid:none) Mus musculus activated spleen cDNA...    63   2e-08
protein update 2009. 4.10
PSORT 

 psg: 0.88  gvh: 0.33  alm: 0.48  top: 0.57  tms: 0.00  mit: 0.21  mip: 0.08
 nuc: 0.18  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHO513 is nuc
5' end seq. ID CHO513F
5' end seq. 
>CHO513F.Seq
AAAAAAAAGTTAATGAATTTAGGAAAGAATTATAATATTTTTTTTTTATATAAATTTTAT
ATGGGTTTATAAAANACTGCGTAGGGATAAATAATAATGGAAAGTAATAAATCATCATCA
CATGGANATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAATGGN
GGNGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGGTTCTTATGAAGTT
GGCAAAACTTTAGGTAATGGTNCATTTGGTAAAGTTAAATTAGGTNCAAATATTTGTNCA
AAANAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGGAAANCAAAAAGAA
ACATGTTTTAAANAAATTGATNTTATGAAATTATTANATCATCCAAATATAGNGAAATTA
TTANATGTTGTTGATAAAAGANNNNNNNNNN
Length of 5' end seq. 451
3' end seq. ID CHO513Z
3' end seq. 
>CHO513Z.Seq
NNNNNNNNNNCAAATTTAAGAAGAAATTCAATTGCAGTTTCAACATTTATGGAAGATGAA
CCAAATGAAATGCCAATTAATAATTTGTATAAAATGAATGAACAAATTCAACAACAACCA
ATTATTGGTGGTAGTGGTAATGTAATGAGATCNCAATTTAATCAAACATTACCAACAATT
GATCAACAACCAGTTATTGAAGCNCCAAAAACGAGAAGAATGAGTTTAGATTCACGTATG
TTAAATGGTGATCAACAATCATTGGTTGAAAAGAATCAACATATGGCAAGTCCAAGAACT
TCGAAAGGTATATTTAAATNTTCAACTACCACTACTAAATCACCAGAGAAAACAATTATC
GAATTGAAAAGATCTNTCGAAGAAAGTGGTTTATTCACTAAAAAGAAAGGTCCTTACCTT
TTNTTATGTTTTGATGAAGATAACTCTGTTAAATTTCAAATCGAAATCGTTAAAATTTGT
AACCTTGATTTAACTGGTATTCAATTAAAAAGATTAAGTGGCGATACTTGGAAATATAAA
GATATTTGTACTGAATTAGTTGAATCAATGAAATTATAAGTTTTTTTTTAAAAAAAAAAT
AAATAGTAATAAATAATAAAAAAATAATAAATAATAAATAAAATAAAAATAANAAATAAA
ATAAAAAAAAAAT
Length of 3' end seq. 673
Connected seq. ID CHO513P
Connected seq. 
>CHO513P.Seq
AAAAAAAAGTTAATGAATTTAGGAAAGAATTATAATATTTTTTTTTTATATAAATTTTAT
ATGGGTTTATAAAANACTGCGTAGGGATAAATAATAATGGAAAGTAATAAATCATCATCA
CATGGANATGTATCAACTTCTCCATCATTTTTAAATAATCATCATCAATTTAATAATGGN
GGNGATATAATCCCAAAAAAGAAAAAAAATAGGATAATGCATGTTGGTTCTTATGAAGTT
GGCAAAACTTTAGGTAATGGTNCATTTGGTAAAGTTAAATTAGGTNCAAATATTTGTNCA
AAANAAAATGTTGCAATTAAATTTATAAAAAATAATAAATTATCAGGAAANCAAAAAGAA
ACATGTTTTAAANAAATTGATNTTATGAAATTATTANATCATCCAAATATAGNGAAATTA
TTANATGTTGTTGATAAAAGA----------CAAATTTAAGAAGAAATTCAATTGCAGTT
TCAACATTTATGGAAGATGAACCAAATGAAATGCCAATTAATAATTTGTATAAAATGAAT
GAACAAATTCAACAACAACCAATTATTGGTGGTAGTGGTAATGTAATGAGATCNCAATTT
AATCAAACATTACCAACAATTGATCAACAACCAGTTATTGAAGCNCCAAAAACGAGAAGA
ATGAGTTTAGATTCACGTATGTTAAATGGTGATCAACAATCATTGGTTGAAAAGAATCAA
CATATGGCAAGTCCAAGAACTTCGAAAGGTATATTTAAATNTTCAACTACCACTACTAAA
TCACCAGAGAAAACAATTATCGAATTGAAAAGATCTNTCGAAGAAAGTGGTTTATTCACT
AAAAAGAAAGGTCCTTACCTTTTNTTATGTTTTGATGAAGATAACTCTGTTAAATTTCAA
ATCGAAATCGTTAAAATTTGTAACCTTGATTTAACTGGTATTCAATTAAAAAGATTAAGT
GGCGATACTTGGAAATATAAAGATATTTGTACTGAATTAGTTGAATCAATGAAATTATAA
GTTTTTTTTTAAAAAAAAAATAAATAGTAATAAATAATAAAAAAATAATAAATAATAAAT
AAAATAAAAATAANAAATAAAATAAAAAAAAAAT
Length of connected seq. 1104
Full length Seq ID -
Full length Seq. -
Length of full length seq. -