>CHO467 (CHO467Q) /CSM/CH/CHO4-C/CHO467Q.Seq.d/
ATATATATATATATATTATTTTTTTTTTAATAAATNCCAAATTTTTATTTTTTTTATTTT
TATTATTATTATTACTTTATTTTTTTTTTNATAAAAAAATNATTTTTTATAANCATTTAA
AAATTTTTTTTTTTTTTTTAAAAAAAAATTTNAXXXXXXXXXX

IYIYIIFFLINXKFLFFLFLLLLLLYFFFXKKXIFYXHLKIFFFFLKKNX---

Frame A:
iyiyilfff**xpnfyffyfyyyyyfiffxikkxffixi*kfffff*kki---


Frame B:
yiyiyyfffnkxqififfifiiiitlfffx*knxfl*xfknfffffkkkf---


Frame C:
IYIYIIFFLINXKFLFFLFLLLLLLYFFFXKKXIFYXHLKIFFFFLKKNX---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHR143 (CHR143Q) /CSM/CH/CHR1-B/CHR143Q.Seq.d/                         54   6e-07
CHO467 (CHO467Q) /CSM/CH/CHO4-C/CHO467Q.Seq.d/                         54   6e-07
AHA657 (AHA657Q) /CSM/AH/AHA6-C/AHA657Q.Seq.d/                         54   6e-07
CHK621 (CHK621Q) /CSM/CH/CHK6-A/CHK621Q.Seq.d/                         48   4e-05
AHB326 (AHB326Q) /CSM/AH/AHB3-B/AHB326Q.Seq.d/                         48   4e-05
CHP351 (CHP351Q) /CSM/CH/CHP3-C/CHP351Q.Seq.d/                         36   0.15
CHH178 (CHH178Q) /CSM/CH/CHH1-D/CHH178Q.Seq.d/                         36   0.15
VSK461 (VSK461Q) /CSM/VS/VSK4-C/VSK461Q.Seq.d/                         34   0.59
VSH667 (VSH667Q) /CSM/VS/VSH6-C/VSH667Q.Seq.d/                         34   0.59
VSH567 (VSH567Q) /CSM/VS/VSH5-C/VSH567Q.Seq.d/                         34   0.59

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CO338585|CO338585.1 EN17132.5prime Exelixis FlyTag MN08 BlueScript Drosophilamelanogaster cDNA clone EN17132 5, mRNA sequence.    32   7e-04  3
CO312735|CO312735.1 EK229834.5prime Exelixis FlyTag CK01 pCDNA-SK+ Drosophila melanogaster cDNA clone EK229834 5, mRNA sequence.    34   0.001  3
BX088542|BX088542.7 Zebrafish DNA sequence from clone CH211-183F16.    38   0.004  3
AY573108|AY573108.1 Adapsilia cornugaster 16S ribosomal RNA gene, partial sequence; mitochondrial.    32   0.005  3
CR149631|CR149631.1 Reverse strand read from insert in 3'HPRT insertion targeting and chromosome engineering clone MHPP354d09.    34   0.008  2
AZ589684|AZ589684.1 1M0398O17R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0398O17 R, DNA sequence.    32   0.013  2
AL492452|AL492452.1 T. brucei sheared genomic DNA clone 319c02, forward sequence.    32   0.013  2
AX458490|AX458490.1 Sequence 36 from Patent WO0246454.             32   0.013  4
BD399283|BD399283.1 Method of Identification of Variety of Rice Plant.    32   0.016  2
U11584|U11584.1 Drosophila melanogaster Oregon-R mitochondrial A+T region.    34   0.016  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 12,415,672

 psg: 0.98  gvh: 0.66  alm: 0.51  top: 0.63  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHO467 is cyt

>CHO467F.Seq
ATATATATATATATATTATTTTTTTTTTAATAAATNCCAAATTTTTATTTTTTTTATTTT
TATTATTATTATTACTTTATTTTTTTTTTNATAAAAAAATNATTTTTTATAANCATTTAA
AAATTTTTTTTTTTTTTTTAAAAAAAAATTTNANNNNNNNNNN