>CHO461 (CHO461Q) /CSM/CH/CHO4-C/CHO461Q.Seq.d/
AGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATA
TTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGA
CAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGC
CAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTT
AAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAA
TGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAA
AGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGG
GTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATC
GAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAA
TTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGC
GGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCXXXXXXXXXXGA
GGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGAC
GCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAG
TGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG
GTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGA
GGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGC
TACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAA
CCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTT
TCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGG
TGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACT
ATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCT
TTTCCAT

galsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspa
kwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskysk
eftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag*N
SCTIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGS---

---GVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*tv
vrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*
krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl
*ttik*trccklpssvqlrgveafp

Frame A:
rss*waifgkqnwrcglnqilg*dv*hslidttkgvsslrqqdgghgsryplrsv*qltc
qmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvt*klecefewscl*crs*w**qifk
riyfegrsgegfhnngihlwvsrs*glg*lslirllghwieseggfntsdfigrkgsglk
flhhrmgy*gnrs*sgtsiggrgrvifsc*hclgvl---

---evseklpqg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrp
s*drlvlpyccqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrihs
rnanqml*svnvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfd
crrlsnelgavsfrvafsyeglrlfh

Frame B:
galsgpflvsrtgdvg*tkywdktsnih**ipqkvlvh*dsrtvamevgir*gvcnnspa
kwtspeng*r*qwmvdaqslkeviilltcrka*r*rrslnvnssgvvfsadldgsskysk
eftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvkvaltlvtl*aereag*N
SCTIEWDIRVTDRNPGHQLAVEEELSFLVNIVLGS---

---rcqksyhrdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldr
retg*fyptvvnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesil
etqtkcfrv*ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssi
vddyqmn*vl*ase*rsvtrg*gfs

Frame C:
ellvghfw*aelamwvepnigirrltftnryhkrc*fiktagrwpwksvsakecvtthlp
nglalkmddassgwsmpnr*kk**yf*rvgrregnvea*m*irvelslvqilmvvaniqk
nll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*rwl*h**lyrpkgkrvki
papsngilg*pivirdinwrsrksylflltlswgp---

---GVRKVTTGITGLWQPSAHSDAAF*sfdvgssyhceaeftkcwivhpltrnvswv*tv
vrqvsftlllsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*
krkpnalececcr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl
*ttik*trccklpssvqlrgveafp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO461 (CHO461Q) /CSM/CH/CHO4-C/CHO461Q.Seq.d/                       2452   0.0
VHI308 (VHI308Q) /CSM/VH/VHI3-A/VHI308Q.Seq.d/                       1273   0.0
VHQ367 (VHQ367Q) /CSM/VH/VHQ3-C/VHQ367Q.Seq.d/                       1247   0.0
VHG394 (VHG394Q) /CSM/VH/VHG3-D/VHG394Q.Seq.d/                       1247   0.0
VHP355 (VHP355Q) /CSM/VH/VHP3-C/VHP355Q.Seq.d/                       1245   0.0
VHL615 (VHL615Q) /CSM/VH/VHL6-A/VHL615Q.Seq.d/                       1245   0.0
VHI207 (VHI207Q) /CSM/VH/VHI2-A/VHI207Q.Seq.d/                       1245   0.0
SHE483 (SHE483Q) /CSM/SH/SHE4-D/SHE483Q.Seq.d/                       1245   0.0
CHQ795 (CHQ795Q) /CSM/CH/CHQ7-D/CHQ795Q.Seq.d/                       1243   0.0
CHP689 (CHP689Q) /CSM/CH/CHP6-D/CHP689Q.Seq.d/                       1239   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1285   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.     1269   0.0    1
AC136838|AC136838.32 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 12 unordered pieces.   341   0.0    20
AC121240|AC121240.27 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 ordered pieces.   341   0.0    20
AC151591|AC151591.1 Nematostella vectensis clone JGIAFIN-297A8, WORKING DRAFT SEQUENCE, 3 unordered pieces.   333   0.0    10
AC150267|AC150267.2 Zea mays clone ZMMBBc0319N15, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.   341   0.0    13
AL158197|AL158197.26 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-368H14.   325   0.0    10
AF479180|AF479180.1 Exacum affine 26S ribosomal RNA gene, complete sequence.   341   0.0    10
AF479148|AF479148.1 Clarkia xantiana 26S ribosomal RNA gene, complete sequence.   341   0.0    10
AF479175|AF479175.1 Montinia caryophyllacea 26S ribosomal RNA gene, complete sequence.   341   0.0    10

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   130   9e-29
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    60   2e-13
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...    75   4e-12
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...    68   7e-10
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ...    68   7e-10
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704...    65   6e-09
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo...    45   3e-05
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    52   6e-05
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica...    45   0.007
BC115436_1(BC115436|pid:none) Mus musculus leucyl-tRNA synthetas...    42   0.034

 psg: 0.75  gvh: 0.45  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHO461 is cyt

>CHO461F.Seq
AGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATA
TTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGA
CAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGC
CAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTT
AAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAA
TGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAA
AGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGG
GTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATC
GAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAA
TTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGC
GGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTCNNNNNNNNNN

>CHO461Z.Seq
NNNNNNNNNNGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGC
GCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCA
GAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACC
GTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGA
TTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATA
GTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTC
TAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGT
GGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTC
CGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGA
TTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGA
GGGGTTGAGGCTTTTCCAT

>CHO461P.Seq
AGGAGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGTGGGTTGAACCAAATA
TTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAGGTGTTAGTTCATTAAGA
CAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTGTGTAACAACTCACCTGC
CAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATGGTCGATGCCCAATCGTT
AAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGGTAACGTAGAAGCTTGAA
TGTGAATTCGAGTGGAGTTGTCTTTAGTGCAGATCTTGATGGTAGTAGCAAATATTCAAA
AGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACAATGGAATTCACTTATGG
GTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGTTACTAGGTCATTGGATC
GAAAGTGAAGGTGGCTTTAACACTAGTGACTTTATAGGCCGAAAGGGAAGCGGGTTAAAA
TTCCTGCACCATCGAATGGGATATTAGGGTAACCGATCGTAATCCGGGACATCAATTGGC
GGTCGAGGAAGAGTTATCTTTTCTTGTTAACATTGTCTTGGGGTCCTC----------GA
GGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGAC
GCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAG
TGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAG
GTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGA
GGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGC
TACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAA
CCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTT
TCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGG
TGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACT
ATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCT
TTTCCAT