>CHO432 (CHO432Q) /CSM/CH/CHO4-B/CHO432Q.Seq.d/
TGGCAAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTA
GTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTG
AAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATG
GTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGG
TAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTC
ATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATA
CAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATG
ATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAACTGGTTAAAGA
AATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAACAA
TTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACTXXXXXXXXXXGAACTG
CAATTGGTGAAGANCCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTA
AAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATG
AAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAA
GTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAG
TTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTT
CACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTA
TCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGA
GCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATA
TTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTC
AAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGG
TTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGA
AAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAGAAAAGA
AAGAAGCGATAAATGGAAAAAGAAAA

ANRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDG
SKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGNGKALTYDWSVSGADT
NTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKITNWLKKSDSASVSVTKKEGEVLDVTI
QGPSIHRMGAIDLT---

---TAIGEXPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQSLDGEKLAFTPKF
SIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLELFNGGSQLSINGL
KDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFGLIEF
AKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKSKKTKEQINKEKEDKKKQ
AKEKKEAINGKRK

Frame A:
wqiglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvvkvyqlannwnflkveslqkm
vvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlviqkvvmekh*pmigrlvgqi
qtln*iiywikimqp*qfqmifchlvklillhlksqtg*rnliaqvfq*qrkrvkf*m*q
fkvqvfivwvqli*---

---elqlvkxhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrmmkvnllmvknllslqn
svfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqklfhlnfsmvalnyqsma
lkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*mvifnvnvtilqslv*ln
lqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkrtnqrkpknkstkkkktkrn
kqkkrkkr*meke

Frame B:
gk*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w*kciswptigifsrwnhfkrw
**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*sfkrw*wksinl*lvg*wgry
khsik*sigsk*cnhnnsk*sfviwsnlyfyt*nhklvkei**rkcfsnkerg*sfrcnn
srskyssygcn*sn---

---ncnw*rxiysck**rfldyni*nstygik*ewsidwfqkg**rsis*w*ktcfhski
qysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkncft*tfqwwlsiinqwp
*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw*ysm*m*psyrvwfn*i
ckilskhldhywtsswwccicscngwyccigkekekqkqkeqikenqrtnqqrkrrqket
skrkersdkwkkk

Frame C:
ANRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDG
SKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGNGKALTYDWSVSGADT
NTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKITNWLKKSDSASVSVTKKEGEVLDVTI
QGPSIHRMGAIDLT---

---TAIGEXPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQSLDGEKLAFTPKF
SIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLELFNGGSQLSINGL
KDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFGLIEF
AKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKSKKTKEQINKEKEDKKKQ
AKEKKEAINGKRK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL562 (SHL562Q) /CSM/SH/SHL5-C/SHL562Q.Seq.d/                       1233   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1233   0.0
SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/                       1233   0.0
SHK878 (SHK878Q) /CSM/SH/SHK8-D/SHK878Q.Seq.d/                       1233   0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/                       1233   0.0
SHK142 (SHK142Q) /CSM/SH/SHK1-B/SHK142Q.Seq.d/                       1233   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1233   0.0
SHG125 (SHG125Q) /CSM/SH/SHG1-B/SHG125Q.Seq.d/                       1233   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1233   0.0
SHD428 (SHD428Q) /CSM/SH/SHD4-B/SHD428Q.Seq.d/                       1233   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX119904|BX119904.4 Human DNA sequence from clone RP11-232D9 on chromosome X Contains  two pseudogenes similar to part of solute carrier family 6  (neurotransmitter transporter) member 14 (SLC6A14) and a novel gene.    36   1e-04  14
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    38   5e-04  30
AC163646|AC163646.2 Mus musculus BAC clone RP23-207D1 from chromosome 14, complete sequence.    44   0.008  5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.20   22
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.45   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.45   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.45   1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces.    48   0.45   1
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.60   20
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.86   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece...    60   1e-07
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.004
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.007

 psg: 0.90  gvh: 0.59  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.47  mip: 0.05
 nuc: 0.23  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHO432 is cyt

>CHO432F.Seq
TGGCAAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTA
GTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTG
AAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATG
GTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGG
TAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTC
ATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATA
CAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATG
ATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAACTGGTTAAAGA
AATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAACAA
TTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACTNNNNNNNNNN

>CHO432Z.Seq
NNNNNNNNNNGAACTGCAATTGGTGAAGANCCATTTACAGTTGCAAGTGATAAAGGTTTC
TCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGT
TTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAA
TTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACT
GGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATT
TTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGC
CTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTT
AAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCAT
AAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAA
TTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTA
TTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAA
AAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAA
CAAGCAAAAGAAAAGAAAGAAGCGATAAATGGAAAAAGAAAA

>CHO432P.Seq
TGGCAAATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTA
GTTCTCCAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTG
AAAGTGTATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATG
GTAGTAAGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGG
TAGATATTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTC
ATTCAAAAGGTGGTAATGGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATA
CAAACACTCAATTAAATAATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATG
ATCTTTTGTCATCTGGTCAAACTTATACTTTTACACTTAAAATCACAAACTGGTTAAAGA
AATCTGATAGCGCAAGTGTTTCAGTAACAAAGAAAGAGGGTGAAGTTTTAGATGTAACAA
TTCAAGGTCCAAGTATTCATCGTATGGGTGCAATTGATCTAACT----------GAACTG
CAATTGGTGAAGANCCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTA
AAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATG
AAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAA
GTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAG
TTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTT
CACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTA
TCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGA
GCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATA
TTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTC
AAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGG
TTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAATCAAAGA
AAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAGAAAAGA
AAGAAGCGATAAATGGAAAAAGAAAA