>CHO361 (CHO361Q) /CSM/CH/CHO3-C/CHO361Q.Seq.d/
TGGCCTACTGGAAATATAATATTAAATATATTATATATATATTTTTATTCAAATTATTTA
TATATAATATATATATATATATATATTTATATATAAATTTTTTATTTTTATATTTAAATT
ATTTTTTAGGGATATTTAATCAAATTGAACAAGCATTATCATTATTACATGACCCAAAAT
CAAATAATANACAAAGAGAAGAATCACAAGTATTTTTAGAAGAGATCAAAACCAGAGCAA
ATGCACATTCTTATGCAATTGCAATCATTACCACATCAAACAATGATATATTGAAACATT
TTGCTTTACATATTATAGANACCTTGGTAAAGAATAGATGGTATGAATGTAACGATCAAG
AGAGAGAATTAATAAAGANGGAGATATTAGAATTGATGAGAAGAATCACATCGAATGAAC
CAAAATTCATAANGGAGAAATTAGTGACCATTTTAGNGGATGTTATTAAAAGAGATTGGC
CACAACGTTGGATGAATCTATTGACATCATTGATTGAAATCTCAAAGATATCANACACAC
ANAXXXXXXXXXXAAAAGGGTGAAAAAGAGAATGAAAAGAATGAAATCGTTGAAGATAAG
ATTTTACGTGACGTTTCAATGGAGTTTTTAATGTGTTGCTCAAATATAATCACACAATCA
CCAAATTATATTTTCAGTAGTATCGATGTTATGACACCAATGGTATATGGTATCTCTAGT
TGTCTAATGGCAATGGATACACCAATCTTAAAGAAGTCATTGATTGTCTCAACTCAATTA
CTTGTGGATCATGAGAAAGTAAATGATCCAAAATTCTTCAAATTGATTGGTTCAGAAATG
TTTGGTTGTTGTATAAAGATTTTAATTGTTAATAAATTTGCAGAATTTTCAAATGATATC
CAATCAATCATTCGTTTAATCTATATGAAATATTATCAAATTTGTAATTATCCTCAAGAG
ATCCTTTTATCATTACCAAATATTACTCCCCCAATTCTTCAAGCTTTCAACAAAGATCTA
ATTTCAACTCGTTCTGAAAAATCTCAAAAAGTTTTATTTAAAAAATTATTACAAGATGTT
ATTGGTATTCCATTAAATAAATTAAAAAAAGAATCAATTTTAGATTTACCAGAGAAATTA
TTTATAAGTAAAATTAGNATCAATCAAATGAAAATATTTCAAATATTTCAAATTATTAAT
TAAATAAATAAATCATTACTAAAATAAATATAATAATAAANATAAAAATGAAT

AYWKYNIKYIIYIFLFKLFIYNIYIYIYLYINFLFLYLNYFLGIFNQIEQALSLLHDPKS
NNXQREESQVFLEEIKTRANAHSYAIAIITTSNNDILKHFALHIIXTLVKNRWYECNDQE
RELIKXEILELMRRITSNEPKFIXEKLVTILXDVIKRDWPQRWMNLLTSLIEISKISXTX
---

---KGEKENEKNEIVEDKILRDVSMEFLMCCSNIITQSPNYIFSSIDVMTPMVYGISSCL
MAMDTPILKKSLIVSTQLLVDHEKVNDPKFFKLIGSEMFGCCIKILIVNKFAEFSNDIQS
IIRLIYMKYYQICNYPQEILLSLPNITPPILQAFNKDLISTRSEKSQKVLFKKLLQDVIG
IPLNKLKKESILDLPEKLFISKIXINQMKIFQIFQIIN*inksllk*i***x*k*

Frame A:
wptgniilnilyiyfysnylyiiyiyiyiyi*ifyfyi*iif*gyliklnkhyhyymtqn
qiixkeknhkyf*krskpeqmhilmqlqslphqtmiy*nillyil*xpw*ridgmnvtik
ren**rxry*n**eeshrmnqns*xrn**pf*xmllkeighnvg*iy*hh*lksqryxth
x---

---krvkkrmkrmkslkirfyvtfqwsf*cvaqi*shnhqiifsvvsml*hqwymvslvv
*wqwihqs*rsh*lsqlnylwimrk*miqnssn*lvqkclvvv*rf*llinlqnfqmisn
qsfv*si*niikfviilkrsfyhyqillpqffklstki*fqlvlknlkkfylknyykmll
vfh*in*kknqf*iyqrnyl*vklxsik*kyfkyfkllik*inhy*nkynnkxkne

Frame B:
gllei*y*iyyiyifiqiiyi*yiyiyifiykffififklffrdi*sn*tsiiiit*pki
k*xtkrritsifrrdqnqskctflcncnhyhikq*yietfcftyyrxlgke*mv*m*rsr
erinkxgdirideknhie*tkihxgeisdhfxgcy*krlattldesidiid*nlkdixht
---

---kg*kre*ke*nr*r*dft*rfngvfnvllkynhtitklyfq*yrcydtngiwyl*ls
ngngytnlkevidclnsitcgs*esk*skilqidwfrnvwllykdfnc**icrifk*ypi
nhsfnlyeilsnl*lssrdpfiitkyyspnsssfqqrsnfnsf*kisksfi*kiitrcyw
ysik*ikkrinfrftreiiyk*n*xqsnenisnisny*lnk*iitkiniiixikmn

Frame C:
AYWKYNIKYIIYIFLFKLFIYNIYIYIYLYINFLFLYLNYFLGIFNQIEQALSLLHDPKS
NNXQREESQVFLEEIKTRANAHSYAIAIITTSNNDILKHFALHIIXTLVKNRWYECNDQE
RELIKXEILELMRRITSNEPKFIXEKLVTILXDVIKRDWPQRWMNLLTSLIEISKISXTX
---

---KGEKENEKNEIVEDKILRDVSMEFLMCCSNIITQSPNYIFSSIDVMTPMVYGISSCL
MAMDTPILKKSLIVSTQLLVDHEKVNDPKFFKLIGSEMFGCCIKILIVNKFAEFSNDIQS
IIRLIYMKYYQICNYPQEILLSLPNITPPILQAFNKDLISTRSEKSQKVLFKKLLQDVIG
IPLNKLKKESILDLPEKLFISKIXINQMKIFQIFQIIN*inksllk*i***x*k*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO361 (CHO361Q) /CSM/CH/CHO3-C/CHO361Q.Seq.d/                       1925   0.0
CHJ124 (CHJ124Q) /CSM/CH/CHJ1-A/CHJ124Q.Seq.d/                        394   e-108
VHL122 (VHL122Q) /CSM/VH/VHL1-A/VHL122Q.Seq.d/                         42   0.020
CHF542 (CHF542Q) /CSM/CH/CHF5-B/CHF542Q.Seq.d/                         42   0.020
VSE857 (VSE857Q) /CSM/VS/VSE8-C/VSE857Q.Seq.d/                         38   0.32
VHN124 (VHN124Q) /CSM/VH/VHN1-A/VHN124Q.Seq.d/                         38   0.32
VSJ224 (VSJ224Q) /CSM/VS/VSJ2-A/VSJ224Q.Seq.d/                         36   1.3
VSI890 (VSI890Q) /CSM/VS/VSI8-D/VSI890Q.Seq.d/                         36   1.3
VSI721 (VSI721Q) /CSM/VS/VSI7-A/VSI721Q.Seq.d/                         36   1.3
VSI145 (VSI145Q) /CSM/VS/VSI1-B/VSI145Q.Seq.d/                         36   1.3

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   2e-04  24
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   3e-04  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   5e-04  23
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36   7e-04  12
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        44   8e-04  24
AX417039|AX417039.1 Sequence 4030 from Patent WO0228891.           36   0.002  14
Z98547|Z98547.2 Plasmodium falciparum MAL3P3.                      38   0.002  9
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   0.007  19
AC112197|AC112197.3 Homo sapiens chromosome 5 clone RP11-442I12, complete sequence.    38   0.009  9
AE017197|AE017197.1 Rickettsia typhi str. Wilmington complete genome.    36   0.011  25

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54PQ8) RecName: Full=Exportin-5;          Short=Exp5;               371   e-101
BX088700_31(BX088700|pid:none) DNA centromeric region sequence f...    69   3e-10
CR380959_46(CR380959|pid:none) Candida glabrata strain CBS138 ch...    68   7e-10
CR382126_929(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    68   7e-10
(P52918) RecName: Full=Protein MSN5;  &S70100(S70100) &U51032_3(...    66   2e-09
X93302_1(X93302|pid:none) S.cerevisiae mRNA for Msn5 protein.          66   2e-09
AE016818_253(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    64   1e-08
CP000498_304(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    57   2e-06
BC128998_1(BC128998|pid:none) Xenopus tropicalis exportin 5, mRN...    56   2e-06
AF271159_1(AF271159|pid:none) Homo sapiens RANBP21 (RANBP21) mRN...    56   2e-06

 psg: 0.94  gvh: 0.46  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.10  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHO361 is cyt

>CHO361F.Seq
TGGCCTACTGGAAATATAATATTAAATATATTATATATATATTTTTATTCAAATTATTTA
TATATAATATATATATATATATATATTTATATATAAATTTTTTATTTTTATATTTAAATT
ATTTTTTAGGGATATTTAATCAAATTGAACAAGCATTATCATTATTACATGACCCAAAAT
CAAATAATANACAAAGAGAAGAATCACAAGTATTTTTAGAAGAGATCAAAACCAGAGCAA
ATGCACATTCTTATGCAATTGCAATCATTACCACATCAAACAATGATATATTGAAACATT
TTGCTTTACATATTATAGANACCTTGGTAAAGAATAGATGGTATGAATGTAACGATCAAG
AGAGAGAATTAATAAAGANGGAGATATTAGAATTGATGAGAAGAATCACATCGAATGAAC
CAAAATTCATAANGGAGAAATTAGTGACCATTTTAGNGGATGTTATTAAAAGAGATTGGC
CACAACGTTGGATGAATCTATTGACATCATTGATTGAAATCTCAAAGATATCANACACAC
ANANNNNNNNNNN

>CHO361Z.Seq
NNNNNNNNNNAAAAGGGTGAAAAAGAGAATGAAAAGAATGAAATCGTTGAAGATAAGATT
TTACGTGACGTTTCAATGGAGTTTTTAATGTGTTGCTCAAATATAATCACACAATCACCA
AATTATATTTTCAGTAGTATCGATGTTATGACACCAATGGTATATGGTATCTCTAGTTGT
CTAATGGCAATGGATACACCAATCTTAAAGAAGTCATTGATTGTCTCAACTCAATTACTT
GTGGATCATGAGAAAGTAAATGATCCAAAATTCTTCAAATTGATTGGTTCAGAAATGTTT
GGTTGTTGTATAAAGATTTTAATTGTTAATAAATTTGCAGAATTTTCAAATGATATCCAA
TCAATCATTCGTTTAATCTATATGAAATATTATCAAATTTGTAATTATCCTCAAGAGATC
CTTTTATCATTACCAAATATTACTCCCCCAATTCTTCAAGCTTTCAACAAAGATCTAATT
TCAACTCGTTCTGAAAAATCTCAAAAAGTTTTATTTAAAAAATTATTACAAGATGTTATT
GGTATTCCATTAAATAAATTAAAAAAAGAATCAATTTTAGATTTACCAGAGAAATTATTT
ATAAGTAAAATTAGNATCAATCAAATGAAAATATTTCAAATATTTCAAATTATTAATTAA
ATAAATAAATCATTACTAAAATAAATATAATAATAAANATAAAAATGAAT

>CHO361P.Seq
TGGCCTACTGGAAATATAATATTAAATATATTATATATATATTTTTATTCAAATTATTTA
TATATAATATATATATATATATATATTTATATATAAATTTTTTATTTTTATATTTAAATT
ATTTTTTAGGGATATTTAATCAAATTGAACAAGCATTATCATTATTACATGACCCAAAAT
CAAATAATANACAAAGAGAAGAATCACAAGTATTTTTAGAAGAGATCAAAACCAGAGCAA
ATGCACATTCTTATGCAATTGCAATCATTACCACATCAAACAATGATATATTGAAACATT
TTGCTTTACATATTATAGANACCTTGGTAAAGAATAGATGGTATGAATGTAACGATCAAG
AGAGAGAATTAATAAAGANGGAGATATTAGAATTGATGAGAAGAATCACATCGAATGAAC
CAAAATTCATAANGGAGAAATTAGTGACCATTTTAGNGGATGTTATTAAAAGAGATTGGC
CACAACGTTGGATGAATCTATTGACATCATTGATTGAAATCTCAAAGATATCANACACAC
ANA----------AAAAGGGTGAAAAAGAGAATGAAAAGAATGAAATCGTTGAAGATAAG
ATTTTACGTGACGTTTCAATGGAGTTTTTAATGTGTTGCTCAAATATAATCACACAATCA
CCAAATTATATTTTCAGTAGTATCGATGTTATGACACCAATGGTATATGGTATCTCTAGT
TGTCTAATGGCAATGGATACACCAATCTTAAAGAAGTCATTGATTGTCTCAACTCAATTA
CTTGTGGATCATGAGAAAGTAAATGATCCAAAATTCTTCAAATTGATTGGTTCAGAAATG
TTTGGTTGTTGTATAAAGATTTTAATTGTTAATAAATTTGCAGAATTTTCAAATGATATC
CAATCAATCATTCGTTTAATCTATATGAAATATTATCAAATTTGTAATTATCCTCAAGAG
ATCCTTTTATCATTACCAAATATTACTCCCCCAATTCTTCAAGCTTTCAACAAAGATCTA
ATTTCAACTCGTTCTGAAAAATCTCAAAAAGTTTTATTTAAAAAATTATTACAAGATGTT
ATTGGTATTCCATTAAATAAATTAAAAAAAGAATCAATTTTAGATTTACCAGAGAAATTA
TTTATAAGTAAAATTAGNATCAATCAAATGAAAATATTTCAAATATTTCAAATTATTAAT
TAAATAAATAAATCATTACTAAAATAAATATAATAATAAANATAAAAATGAAT