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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFG886
Library AF
(Link to library)
Clone ID AFG886
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07707-1
Original site URL
Representative seq. ID AFG886P
(Link to Original site)
Representative DNA sequence 
>AFG886 (AFG886Q) /CSM/AF/AFG8-D/AFG886Q.Seq.d/
ACTAACACTTTCAACACCCACACATAATATTAACAATAACAAAATATAGAATATAGAATA
TCGCTGTATATACAAATACAACACAAGCATCTATATATATATATATATAAAATAAATTCA
TTTTGAAGTTTTGTAACAATAGTATAAAACAGATAAACAGATAAATAGATAATCTTTTTT
TTTTTNCNTNAAAATTTTTTTTTTTTAAAANTXXXXXXXXXXATCACCCGATGAATTAGT
TNCTCCCCAAGTAAAGAANCAAATAATATTTAATATCNCCNCCATTTAATAGTAATTCTT
TAAGAGTATAAATGAAAATNCAAATCAAACNCCAAAATTCACTCATTTAGAAAATAAAAG
TGATACCACCCCCTAATAATAATAATAATAGCGCTAGTAAAAATAAAAATAAAAGAAATT
CATATAATAGTTATAAATCATTTGAAGATGAAGATTTATTTAGAGAAGGTGGTCAATCAA
TTAATGGCGCGAGTGATGGTAGTTCAAGCCCACCAATTAAAATAAAATTACAAGATACAC
ATTATGAATTAATTCAAAATGGTAATCAATCAATTAATGAAAATAATAATGGCGGTGGTA
ATGGTAATGGTAATAGTGTTCCAAAATTCTTAAATTTTGAAGAGATTGTAAATAACGAAA
ATAATAATATCATAAAAAATAGTTTAAAAGGAAGTGGTGGTGGTGGTATTGGTCGTATGG
GATTATTATCAACTTCATCAAGTTCATTTGTAGAAAAGGTTACAGCAAAAGAAAGATTCC
GATATTTTTATAAACTTTGTAATACATCAAATTAAAACCAGTACTTGGTTAACTTGGGTG
AAATTANTTGTTTTAGTATGTATTATAACTTTATGTTATGTTGGCAATTTTCNAATTTAA
AATTCAAAGTCATTTATCAACATCATCAAATGATAATATTTACCAAGAAGGACATCAATT
AATAAATACATCAACCGATGAATTAAGTTCATCACCAAGTAAAGAANCNAATAATAATTT
AATATCACCACCATTTAATAGTAAATTCTTTAAGAGTATAAATGAAAATACCNATCAAAC
NCCANNATTCACTCATTTAGAAAATACAAGTNATACCACACCTAATAA
sequence update 2001. 6. 2
Translated Amino Acid sequence 
*hfqhphiiltitkyri*niavytnttqasiyiyi*nkfilkfcnnsikqinr*IDNLFF
FXXKFFFFKX---

---SPDELVXPQVKXQIIFNIXXI***ffksinenxnqtpkfthlenksdttp******r
**k*k*kkfi**l*ii*r*rfi*rrwsin*wre*w*fkptn*nkitrytl*inskw*sin
**k**wrw*w*w**cskilkf*rdck*rk**yhkk*fkrkwwwwywsygiiinfikficr
kgyskrkipifl*tl*yiklkpvlg*lg*nxlf*yvl*lyvmlaifxfkiqshlstssnd
niyqeghqlintstdelssspskexnnnlisppfnskffksinentxqtpxfthlentsx
ttpn
Translated Amino Acid sequence (All Frames) 
Frame A:
tntfntht*y*q*qnieyrislyiqiqhkhlyiyiykinsf*sfvtiv*nr*tdk*iiff
fxxxnffflk---

---itr*isxspskexnni*yxxhlivil*eyk*kxksnxkihsfrk*k*yhpliiiiia
lvkikikeihiivinhlkmkiylekvvnqlmarvmvvqahqlk*nykihimn*fkmvinq
lmkiimavvmvmvivfqns*ilkrl*itkiiis*kiv*kevvvvvlvvwdyyqlhqvhl*
krlqqkkdsdifinfvihqiktstwltwvklxvlvciitlcyvgnfxi*nsksfiniik*
*ylprrtsinkyinr*ikfitk*rxx**fnitti***il*eyk*kyxsnxxihsfrkykx
yht**

Frame B:
ltlstpthninnnki*nieyrciykyntsiyiyiyik*ihfevl*q*yktdkqinr*sff
fxxkifff*x---

---SPDELVXPQVKXQIIFNIXXI***ffksinenxnqtpkfthlenksdttp******r
**k*k*kkfi**l*ii*r*rfi*rrwsin*wre*w*fkptn*nkitrytl*inskw*sin
**k**wrw*w*w**cskilkf*rdck*rk**yhkk*fkrkwwwwywsygiiinfikficr
kgyskrkipifl*tl*yiklkpvlg*lg*nxlf*yvl*lyvmlaifxfkiqshlstssnd
niyqeghqlintstdelssspskexnnnlisppfnskffksinentxqtpxfthlentsx
ttpn

Frame C:
*hfqhphiiltitkyri*niavytnttqasiyiyi*nkfilkfcnnsikqinr*IDNLFF
FXXKFFFFKX---

---hpmn*xlpk*rxk*ylisppfnsnslrv*mkxqikxqnsli*kikvipppnnnnnsa
sknknkrnsynsyksfededlfreggqsingasdgsssppikiklqdthyeliqngnqsi
nennngggngngnsvpkflnfeeivnnennniiknslkgsggggigrmgllstssssfve
kvtakerfryfyklcntsn*nqylvnlgeixcfsmyynfmlcwqfsnlkfkviyqhhqmi
iftkkdin**ihqpmn*vhhqvkxxiii*yhhhlivnslrv*mkipikxxxsli*kiqvi
phli
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFG886 (AFG886Q) /CSM/AF/AFG8-D/AFG886Q.Seq.d/                       1362   0.0
CFI204 (CFI204Q) /CSM/CF/CFI2-A/CFI204Q.Seq.d/                        835   0.0
CFE176 (CFE176Q) /CSM/CF/CFE1-D/CFE176Q.Seq.d/                        688   0.0
SSM263 (SSM263Q) /CSM/SS/SSM2-C/SSM263Q.Seq.d/                         54   5e-06
FC-BI16 (FC-BI16Q) /CSM/FC/FC-BI/FC-BI16Q.Seq.d/                       54   5e-06
SSI354 (SSI354Q) /CSM/SS/SSI3-C/SSI354Q.Seq.d/                         46   0.001
VHI651 (VHI651Q) /CSM/VH/VHI6-C/VHI651Q.Seq.d/                         42   0.018
VFM552 (VFM552Q) /CSM/VF/VFM5-C/VFM552Q.Seq.d/                         42   0.018
VFH869 (VFH869Q) /CSM/VF/VFH8-C/VFH869Q.Seq.d/                         42   0.018
VFF596 (VFF596Q) /CSM/VF/VFF5-D/VFF596Q.Seq.d/                         42   0.018
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   3e-16  27
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   2e-14  29
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   1e-12  23
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   1e-11  19
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   2e-11  28
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   2e-11  30
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   2e-10  20
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    40   5e-10  18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44   5e-10  24
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36   2e-09  20
dna update 2004. 3.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844507_76(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   4.6
protein update 2008.11.21
PSORT 

 psg: 0.82  gvh: 0.44  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFG886 is cyt
5' end seq. ID AFG886F
5' end seq. 
>AFG886F.Seq
ACTAACACTTTCAACACCCACACATAATATTAACAATAACAAAATATAGAATATAGAATA
TCGCTGTATATACAAATACAACACAAGCATCTATATATATATATATATAAAATAAATTCA
TTTTGAAGTTTTGTAACAATAGTATAAAACAGATAAACAGATAAATAGATAATCTTTTTT
TTTTTNCNTNAAAATTTTTTTTTTTTAAAANT----------
Length of 5' end seq. 212
3' end seq. ID AFG886Z
3' end seq. 
>AFG886Z.Seq
----------ATCACCCGATGAATTAGTTNCTCCCCAAGTAAAGAANCAAATAATATTTA
ATATCNCCNCCATTTAATAGTAATTCTTTAAGAGTATAAATGAAAATNCAAATCAAACNC
CAAAATTCACTCATTTAGAAAATAAAAGTGATACCACCCCCTAATAATAATAATAATAGC
GCTAGTAAAAATAAAAATAAAAGAAATTCATATAATAGTTATAAATCATTTGAAGATGAA
GATTTATTTAGAGAAGGTGGTCAATCAATTAATGGCGCGAGTGATGGTAGTTCAAGCCCA
CCAATTAAAATAAAATTACAAGATACACATTATGAATTAATTCAAAATGGTAATCAATCA
ATTAATGAAAATAATAATGGCGGTGGTAATGGTAATGGTAATAGTGTTCCAAAATTCTTA
AATTTTGAAGAGATTGTAAATAACGAAAATAATAATATCATAAAAAATAGTTTAAAAGGA
AGTGGTGGTGGTGGTATTGGTCGTATGGGATTATTATCAACTTCATCAAGTTCATTTGTA
GAAAAGGTTACAGCAAAAGAAAGATTCCGATATTTTTATAAACTTTGTAATACATCAAAT
TAAAACCAGTACTTGGTTAACTTGGGTGAAATTANTTGTTTTAGTATGTATTATAACTTT
ATGTTATGTTGGCAATTTTCNAATTTAAAATTCAAAGTCATTTATCAACATCATCAAATG
ATAATATTTACCAAGAAGGACATCAATTAATAAATACATCAACCGATGAATTAAGTTCAT
CACCAAGTAAAGAANCNAATAATAATTTAATATCACCACCATTTAATAGTAAATTCTTTA
AGAGTATAAATGAAAATACCNATCAAACNCCANNATTCACTCATTTAGAAAATACAAGTN
ATACCACACCTAATAA
Length of 3' end seq. 906
Connected seq. ID AFG886P
Connected seq. 
>AFG886P.Seq
ACTAACACTTTCAACACCCACACATAATATTAACAATAACAAAATATAGAATATAGAATA
TCGCTGTATATACAAATACAACACAAGCATCTATATATATATATATATAAAATAAATTCA
TTTTGAAGTTTTGTAACAATAGTATAAAACAGATAAACAGATAAATAGATAATCTTTTTT
TTTTTNCNTNAAAATTTTTTTTTTTTAAAANT----------ATCACCCGATGAATTAGT
TNCTCCCCAAGTAAAGAANCAAATAATATTTAATATCNCCNCCATTTAATAGTAATTCTT
TAAGAGTATAAATGAAAATNCAAATCAAACNCCAAAATTCACTCATTTAGAAAATAAAAG
TGATACCACCCCCTAATAATAATAATAATAGCGCTAGTAAAAATAAAAATAAAAGAAATT
CATATAATAGTTATAAATCATTTGAAGATGAAGATTTATTTAGAGAAGGTGGTCAATCAA
TTAATGGCGCGAGTGATGGTAGTTCAAGCCCACCAATTAAAATAAAATTACAAGATACAC
ATTATGAATTAATTCAAAATGGTAATCAATCAATTAATGAAAATAATAATGGCGGTGGTA
ATGGTAATGGTAATAGTGTTCCAAAATTCTTAAATTTTGAAGAGATTGTAAATAACGAAA
ATAATAATATCATAAAAAATAGTTTAAAAGGAAGTGGTGGTGGTGGTATTGGTCGTATGG
GATTATTATCAACTTCATCAAGTTCATTTGTAGAAAAGGTTACAGCAAAAGAAAGATTCC
GATATTTTTATAAACTTTGTAATACATCAAATTAAAACCAGTACTTGGTTAACTTGGGTG
AAATTANTTGTTTTAGTATGTATTATAACTTTATGTTATGTTGGCAATTTTCNAATTTAA
AATTCAAAGTCATTTATCAACATCATCAAATGATAATATTTACCAAGAAGGACATCAATT
AATAAATACATCAACCGATGAATTAAGTTCATCACCAAGTAAAGAANCNAATAATAATTT
AATATCACCACCATTTAATAGTAAATTCTTTAAGAGTATAAATGAAAATACCNATCAAAC
NCCANNATTCACTCATTTAGAAAATACAAGTNATACCACACCTAATAA
Length of connected seq. 1118
Full length Seq ID -
Full length Seq. -
Length of full length seq. -