CHO261
Library CH
(Link to library)
Clone ID CHO261
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11048-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHO261 (CHO261Q) /CSM/CH/CHO2-C/CHO261Q.Seq.d/
XXXXXXXXXXGTCAAAGAGAGTAAACCATTCATCTCATTCAAAAAGGTTGTCAAAGATAT
GGGTGGTGATTATGCAGATTTAGAGATGGTTTCATTCCATTCAGTTAGTAAAGGTTTCGT
TGGTGAATGTGGTAAACGTGGTGGTTATATGGAATTAAATGGTGTCACTCAAGATGTTAA
AGCTGAAATTTATAAACTCGCATCAATTGGTTTATGTCCAAATGTTATTGGTCAATTGGT
TGTTGATTTAATGGTTCGTCCACCAGTTGCTGGTGAACAATCACATGATCTCTACCTTAA
AGAAAGAGATAATATCTATGAATCTTTAAAAAAACGTGCAAATCTCTTAACAAATGCTTT
AAATAATCTTGAAGGTGTAACTTGTAATCCATCAGAAGGTGCAATGTATGCTTTCCCACA
AATTCGTCTTCCAGCTAAAGCTGTAGAATATGCAAATTCAATTGGTAAAGCACCAGATGC
TTACTATTGTATTCAATTACTCGAAGCCACTGGTATCTGTGTTGTACCAGGTAGTGGTTT
CGGTCAAAAAGATGGTACTTGGCATTTTAGAACTACCTTCTTACCTTCTGAAGAAGCAAT
TGAAGGTGTTTGTAAGAGAATCGCTGATTTCCA
sequence update 2002. 9.10
Translated Amino Acid sequence
---KESKPFISFKKVVKDMGGDYADLEMVSFHSVSKGFVGECGKRGGYMELNGVTQDVKA
EIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALN
NLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFG
QKDGTWHFRTTFLPSEEAIEGVCKRIADF


Translated Amino Acid sequence (All Frames)
Frame A:
---skrvnhsshskrlskiwvvimqi*rwfhsiqlvkvslvnvvnvvviwn*mvslkmlk
lkfinshqlvyvqmllvnwlli*wfvhqllvnnhmistlkkeiismnl*knvqis*qml*
iilkv*lvihqkvqcmlshkfvfqlkl*nmqiqlvkhqmltivfnyskplvsvlyqvvvs
vkkmvlgilelpsyllkkqlkvfvreslis


Frame B:
---qre*tihliqkgcqrygw*lcrfrdgfipfs**rfrw*mw*twwlygikwchsrc*s
*nl*trinwfmskcywsigc*fngsstscw*tit*slp*rkr*yl*ifkktckslnkcfk
*s*rcnl*sirrcnvcfptnssss*scrickfnw*strclllysitrshwylcctr*wfr
skrwylaf*nylltf*rsn*rcl*enr*fp


Frame C:
---KESKPFISFKKVVKDMGGDYADLEMVSFHSVSKGFVGECGKRGGYMELNGVTQDVKA
EIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLLTNALN
NLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVPGSGFG
QKDGTWHFRTTFLPSEEAIEGVCKRIADF


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHO261 (CHO261Q) /CSM/CH/CHO2-C/CHO261Q.Seq.d/ 1193 0.0
AFL481 (AFL481Q) /CSM/AF/AFL4-D/AFL481Q.Seq.d/ 1144 0.0
VSG112 (VSG112Q) /CSM/VS/VSG1-A/VSG112Q.Seq.d/ 1106 0.0
VFI809 (VFI809Q) /CSM/VF/VFI8-A/VFI809Q.Seq.d/ 977 0.0
VFM728 (VFM728Q) /CSM/VF/VFM7-B/VFM728Q.Seq.d/ 521 e-147
SHF884 (SHF884Q) /CSM/SH/SHF8-D/SHF884Q.Seq.d/ 36 0.62
SFI437 (SFI437Q) /CSM/SF/SFI4-B/SFI437Q.Seq.d/ 36 0.62
SFI337 (SFI337Q) /CSM/SF/SFI3-B/SFI337Q.Seq.d/ 36 0.62
SFD435 (SFD435Q) /CSM/SF/SFD4-B/SFD435Q.Seq.d/ 36 0.62
AHP222 (AHP222Q) /CSM/AH/AHP2-A/AHP222Q.Seq.d/ 36 0.62

own update 2002.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL407784|AL407784.1 T3 end of clone AV0AA004E07 of library AV0AA from strain CBS 379 ofSaccharomyces exiguus. 52 4e-07 3
AL408836|AL408836.1 T3 end of clone AV0AA010H12 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 52 5e-07 3
AU299513|AU299513.2 Cryptomeria japonica mRNA, clone: CM1036, 5' end, expressed in male cone. 48 1e-04 2
CV628699|CV628699.1 Mdlv3_4029p06.y1 Mdlv3 Malus x domestica cDNA clone Mdlv3_4029p06 5' similar to TR:Q9S7E9 Q9S7E9 PUTATIVE ALANINE AMINOTRANSFERASE. ;, mRNA sequence. 54 0.003 1
BG734274|T34028 hypothetical protein C32F10.8 - Caenorhabditis elegans, mRNA sequence. 38 0.006 2
CF438479|CF438479.1 EST674824 normalized cDNA library of onion Allium cepa cDNA clone ACAAA07, mRNA sequence. 34 0.009 3
CF435938|CF435938.1 EST672283 normalized cDNA library of onion Allium cepa cDNA clone ACACB12, mRNA sequence. 34 0.011 3
AL440227|AL440227.1 T7 end of clone BD0AA010H05 of library BD0AA from strain CBS 94 of Candida tropicalis. 52 0.012 1
AL438964|AL438964.1 T7 end of clone BD0AA001E08 of library BD0AA from strain CBS 94 of Candida tropicalis. 52 0.012 1
BP748615|BP748615.1 Nicotiana sylvestris mRNA, expressed in leaf, clone: L-105_E06. 50 0.048 1
dna update 2005. 8.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MJ7) RecName: Full=Probable alanine aminotransferase, mitoch... 398 e-110
CP001323_204(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 246 3e-64
AY664415_3(AY664415|pid:none) Zea mays cultivar B73 locus 9009, ... 233 4e-60
AY035086_1(AY035086|pid:none) Arabidopsis thaliana putative alan... 232 7e-60
AC016529_20(AC016529|pid:none) Arabidopsis thaliana chromosome 1... 232 7e-60
AC079936_10(AC079936|pid:none) Oryza sativa (japonica cultivar-g... 227 2e-58
AP008209_540(AP008209|pid:none) Oryza sativa (japonica cultivar-... 226 3e-58
AF055898_1(AF055898|pid:none) Zea mays alanine aminotransferase ... 224 1e-57
(P34106) RecName: Full=Alanine aminotransferase 2; Shor... 223 3e-57
EU165371_1(EU165371|pid:none) Glycine max alanine aminotransfera... 223 4e-57
protein update 2009. 5.20
PSORT

psg: 0.58 gvh: 0.42 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CHO261 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHO261Z
3' end seq.
>CHO261Z.Seq
NNNNNNNNNNGTCAAAGAGAGTAAACCATTCATCTCATTCAAAAAGGTTGTCAAAGATAT
GGGTGGTGATTATGCAGATTTAGAGATGGTTTCATTCCATTCAGTTAGTAAAGGTTTCGT
TGGTGAATGTGGTAAACGTGGTGGTTATATGGAATTAAATGGTGTCACTCAAGATGTTAA
AGCTGAAATTTATAAACTCGCATCAATTGGTTTATGTCCAAATGTTATTGGTCAATTGGT
TGTTGATTTAATGGTTCGTCCACCAGTTGCTGGTGAACAATCACATGATCTCTACCTTAA
AGAAAGAGATAATATCTATGAATCTTTAAAAAAACGTGCAAATCTCTTAACAAATGCTTT
AAATAATCTTGAAGGTGTAACTTGTAATCCATCAGAAGGTGCAATGTATGCTTTCCCACA
AATTCGTCTTCCAGCTAAAGCTGTAGAATATGCAAATTCAATTGGTAAAGCACCAGATGC
TTACTATTGTATTCAATTACTCGAAGCCACTGGTATCTGTGTTGTACCAGGTAGTGGTTT
CGGTCAAAAAGATGGTACTTGGCATTTTAGAACTACCTTCTTACCTTCTGAAGAAGCAAT
TGAAGGTGTTTGTAAGAGAATCGCTGATTTCCA
Length of 3' end seq. 633
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -