>CHO244 (CHO244Q) /CSM/CH/CHO2-B/CHO244Q.Seq.d/
AGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAGATATTAATACTAATAT
AATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAAXXXXXXXXXX

vdsv*RNFIGFLILDINTNIINK*inkyink*kk---

Frame A:
srfglkkfywffntry*y*ynk*ink*iyk*ikk---


Frame B:
vdsv*RNFIGFLILDINTNIINK*inkyink*kk---


Frame C:
*irfkeillvf*y*ilili**ink*ini*inkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ411 (VHQ411Q) /CSM/VH/VHQ4-A/VHQ411Q.Seq.d/                         70   7e-12
VHO685 (VHO685Q) /CSM/VH/VHO6-D/VHO685Q.Seq.d/                         70   7e-12
VHM332 (VHM332Q) /CSM/VH/VHM3-B/VHM332Q.Seq.d/                         70   7e-12
VHH693 (VHH693Q) /CSM/VH/VHH6-D/VHH693Q.Seq.d/                         70   7e-12
VHF372 (VHF372Q) /CSM/VH/VHF3-C/VHF372Q.Seq.d/                         70   7e-12
VHD456 (VHD456Q) /CSM/VH/VHD4-C/VHD456Q.Seq.d/                         70   7e-12
VHD118 (VHD118Q) /CSM/VH/VHD1-A/VHD118Q.Seq.d/                         70   7e-12
VHD113 (VHD113Q) /CSM/VH/VHD1-A/VHD113Q.Seq.d/                         70   7e-12
VHC464 (VHC464Q) /CSM/VH/VHC4-C/VHC464Q.Seq.d/                         70   7e-12
SHG429 (SHG429Q) /CSM/SH/SHG4-B/SHG429Q.Seq.d/                         70   7e-12

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    64   5e-07  1
AC095544|AC095544.8 Rattus norvegicus 6 BAC CH230-8M9 (Children's Hospital Oakland Research Institute) complete sequence.    42   1.8    1
AW234753|AW234753.1 sf18h02.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-364 5', mRNA sequence.    42   1.8    1
CO832895|CO832895.1 LM_GH5_000829 Locusta migratoria gregarious phase's head cDNA library Locusta migratoria cDNA, mRNA sequence.    40   7.2    1
AC108007|AC108007.5 Homo sapiens chromosome 11, clone CTD-3038L12, complete sequence.    40   7.2    1
AV065281|AV065281.1 Mus musculus adult male small intestine cDNA, partial sequence, clone 2010015E09.    40   7.2    1
AC090099|AC090099.14 Homo sapiens chromosome 11, clone RP11-113D6, complete sequence.    40   7.2    1
BB811040|BB811040.1 Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730008D11, 3' end partial sequence.    40   7.2    1
AV062105|AV062105.1 Mus musculus adult male small intestine cDNA, partial sequence, clone 2010002D17.    40   7.2    1
CR900961|CR900961.1 Sus scrofa BES.                                40   7.2    1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 55,790,883

 psg: 0.95  gvh: 0.21  alm: 0.32  top: 0.33  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHO244 is cyt

>CHO244F.Seq
AGTAGATTCGGTTTAAAGAAATTTTATTGGTTTTTTAATACTAGATATTAATACTAATAT
AATAAATAAATAAATAAATAAATATATAAATAAATAAAAAAAAAANNNNNNNNNN