CHO239 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHO239
Library	CH (Link to library)
Clone ID	CHO239 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10823-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHO2-B/CHO239Q.Seq.d/
Representative seq. ID	CHO239P (Link to Original site)
Representative DNA sequence	>CHO239 (CHO239Q) /CSM/CH/CHO2-B/CHO239Q.Seq.d/ GTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATT TTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATAT CCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAAC CTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTAACTTTT GAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAAGTC CCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAATTGAA TTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTT AATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTA NAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTAXXXXXXXXXXGT GATCCAGGTGTTAGACCATTATTCTTTGAATATCCATCAGATCCCAAATACTTTTGCAAT TGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTTCTCACTCAAGGTGC TACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATATGGTAATGGTTCATT GGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGATGTAATCAACGTTCA TATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATATGTTACACCAGTTGA TGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGAATTGATTATTGCCTT GGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGGTGAATCAATTCAAAC CTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTCCTCACCATCTTCATC TGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGGTACCGCTTCTTTAAT CATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGTCATTGTTAATGGTAG CCCAATCAATTCATTTAATGCTGTTTCNGATTCAACTCTCTCTGTTTCAAATTTACAACT GCTTTAGATGAATCCTT
sequence update	2002.10.25
Translated Amino Acid sequence	vlkiTKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATLN LISAGPYGNDIXQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGXNPXSTDYIIE FTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYGL--- ---VIQVLDHYSLNIHQIPNTFAIDQQFLVGTGLMVSPVLTQGATTVNAYFPNDIWYEYG NGSLVQSVGTHQTLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFEL IIALDSSLQATGQLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGT ASLIINSIQIYGSPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLLmnp
Translated Amino Acid sequence (All Frames)	Frame A: vlkiTKTKKKMKLLSSLIIFFVIVLFXVVGSLSASLCKYPGYSTQGVTKTNNGYEATLN LISAGPYGNDIXQLNFQLTFETSQIFXVXITDPNNQRWEVPPTVNQLVGXNPXSTDYIIE FTNNPFGFAATRISTGEVLFNTTQPSDCSFNGLIYSNYYLXLSTSFTESNPNIYGL--- ---VIQVLDHYSLNIHQIPNTFAIDQQFLVGTGLMVSPVLTQGATTVNAYFPNDIWYEYG NGSLVQSVGTHQTLNAPFDVINVHMRGGNIIPTQPTSSYVTPVDGIPITTKISRTLPFEL IIALDSSLQATGQLFLDDGESIQTYVDNKYSFIQFDVVSSPSSSAYKLQSTILNNNYNGT ASLIINSIQIYGSPSVQQVIVNGSPINSFNAVSDSTLSVSNLQLLmnp Frame B: ckyklklkkknfclhlfflllyyfxlldhyqhhyvniqviqlkxlqkqimvmrqhlt lfqqvhmvtixnnifnllklvkflxlxlltqiikdgkshqllinlxkixiqliiln lqiihlvlqqlvfqlvkfyliqlnqvivhlmvfiqiiixnvhhsqrviqifmv--- ---srctiilisirsqillqlinnflvqvwyhqfslkvlpqmltsqmisgmnmv mvhwfnqlvpiklmlhsmstficvvvisfqlnqpphmlhqlmvfqlplkslelyhln llpwilhykqlvnyswmmvnqfkpmliintlsfnsmlsphhlhlptnynqpfsitiimvp llslilskstvrhqfnksllmvaqsihlmlfxiqlslfqiyncfril Frame C: vkninnkknetfvfinyffcyciilxcwiiisiimisrlfnsrxyknkwlgntp yfsrsiwryxtikfsinfnsnfxsxnypkskmgsptncsiswxksxfnlyni yksiwfcsnsyfnwsfiynstklfiwfnlfkllfxikyiihreskylwf--- ---dpgvrplffeypsdpkyfcnstifswyrfngitsshsrcyhsecllpkylviw wfigsiswypsnfkcsircnqrsyawwyhsnstnllicytswysnyhnlnftiid yclgffitsnwsiilgwinsnlc*ilfhsircclltificlqitinhsqqlwyr ffnhfypnlrfaisstshcwpnqfi*ccfxfnslcfkfttaldes
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHO239 (CHO239Q) /CSM/CH/CHO2-B/CHO239Q.Seq.d/ 2192 0.0 SHG203 (SHG203Q) /CSM/SH/SHG2-A/SHG203Q.Seq.d/ 1316 0.0 CHS485 (CHS485Q) /CSM/CH/CHS4-D/CHS485Q.Seq.d/ 1316 0.0 CHL607 (CHL607Q) /CSM/CH/CHL6-A/CHL607Q.Seq.d/ 1316 0.0 CHR857 (CHR857Q) /CSM/CH/CHR8-C/CHR857Q.Seq.d/ 1310 0.0 CHM276 (CHM276Q) /CSM/CH/CHM2-D/CHM276Q.Seq.d/ 1310 0.0 AHN661 (AHN661Q) /CSM/AH/AHN6-C/AHN661Q.Seq.d/ 1310 0.0 AHM502 (AHM502Q) /CSM/AH/AHM5-A/AHM502Q.Seq.d/ 1310 0.0 AHA841 (AHA841Q) /CSM/AH/AHA8-B/AHA841Q.Seq.d/ 1310 0.0 SHG509 (SHG509Q) /CSM/SH/SHG5-A/SHG509Q.Seq.d/ 1302 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 3e-05 22 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 2e-04 18 AY653733\|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome. 32 5e-04 29 AC116956\|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 32 9e-04 18 BX842642\|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 32 0.002 17 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 32 0.004 16 CR548612\|CR548612.1 Paramecium tetraurelia macronuclear largest chromosome, complete sequence. 32 0.007 24 AE017263\|AE017263.1 Mesoplasma florum L1 complete genome. 34 0.007 21 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 32 0.009 11 AE014821\|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 34 0.010 13
dna update	2005. 8.14
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF118226_1(AF118226\|pid:none) Hordeum vulgare high pI alpha-gluc... 122 3e-27 AB000967_1(AB000967\|pid:none) Coturnix japonica GAAI mRNA for ac... 120 3e-26 (Q43763) RecName: Full=Alpha-glucosidase; EC=3.2.1.20; ... 119 3e-26 AF016833_1(AF016833\|pid:none) Homo sapiens maltase-glucoamylase ... 117 8e-25 AB057452_1(AB057452\|pid:none) Physcomitrella patens subsp. paten... 115 2e-24 EU937530_1(EU937530\|pid:none) Mus musculus sucrase-isomaltase mR... 115 3e-24 (O43451) RecName: Full=Maltase-glucoamylase, intestinal; Include... 115 3e-24 AM430903_1(AM430903\|pid:none) Vitis vinifera contig VV78X052784.... 110 4e-24 AB006754_1(AB006754\|pid:none) Coturnix japonica GAAII mRNA for a... 109 1e-23 EU955937_1(EU955937\|pid:none) Zea mays clone 1553282 unknown mRNA. 108 3e-23
protein update	2009. 4.10
PSORT	psg: 1.02 gvh: 0.72 alm: 0.40 top: 0.27 tms: 0.00 mit: 0.33 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 64.0 %: extracellular, including cell wall 12.0 %: cytoplasmic 8.0 %: vacuolar 8.0 %: endoplasmic reticulum 4.0 %: mitochondrial 4.0 %: nuclear >> prediction for CHO239 is exc
5' end seq. ID	CHO239F
5' end seq.	>CHO239F.Seq GTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATT TTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATAT CCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAAC CTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTAACTTTT GAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAAGTC CCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAATTGAA TTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTT AATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTA NAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTANNNNNNNNNN
Length of 5' end seq.	538
3' end seq. ID	CHO239Z
3' end seq.	>CHO239Z.Seq NNNNNNNNNNGTGATCCAGGTGTTAGACCATTATTCTTTGAATATCCATCAGATCCCAAA TACTTTTGCAATTGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTTCT CACTCAAGGTGCTACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATATGG TAATGGTTCATTGGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGATGT AATCAACGTTCATATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATATGT TACACCAGTTGATGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGAATT GATTATTGCCTTGGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGGTGA ATCAATTCAAACCTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTCCTC ACCATCTTCATCTGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGGTAC CGCTTCTTTAATCATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGTCAT TGTTAATGGTAGCCCAATCAATTCATTTAATGCTGTTTCNGATTCAACTCTCTCTGTTTC AAATTTACAACTGCTTTAGATGAATCCTT
Length of 3' end seq.	689
Connected seq. ID	CHO239P
Connected seq.	>CHO239P.Seq GTGTTAAAAATATAAACTAAAACTAAAAAAAAAATGAAACTTTTGTCTTCATTAATTATT TTTTTTGTTATTGTATTATTTTGNGTTGTTGGATCATTATCAGCATCATTATGTAAATAT CCAGGTTATTCAACTCAAGGNGTTACAAAAACAAATAATGGTTATGAGGCAACACTTAAC CTTATTTCAGCAGGTCCATATGGTAACGATATANAACAATTAAATTTTCAATTAACTTTT GAAACTAGTCAAATTTTTANAGTTANAATTACTGACCCAAATAATCAAAGATGGGAAGTC CCACCAACTGTTAATCAATTAGTTGGANAAAATCCANATTCAACTGATTATATAATTGAA TTTACAAATAATCCATTTGGTTTTGCAGCAACTCGTATTTCAACTGGTGAAGTTTTATTT AATACAACTCAACCAAGTGATTGTTCATTTAATGGTTTAATTTATTCAAATTATTATTTA NAATTAAGTACATCATTCACAGAGAGTAATCCAAATATTTATGGTTTA----------GT GATCCAGGTGTTAGACCATTATTCTTTGAATATCCATCAGATCCCAAATACTTTTGCAAT TGATCAACAATTTTTAGTTGGTACAGGTTTAATGGTATCACCAGTTCTCACTCAAGGTGC TACCACAGTGAATGCTTACTTCCCAAATGATATCTGGTATGAATATGGTAATGGTTCATT GGTTCAATCAGTTGGTACCCATCAAACTTTAAATGCTCCATTCGATGTAATCAACGTTCA TATGCGTGGTGGTAATATCATTCCAACTCAACCAACCTCCTCATATGTTACACCAGTTGA TGGTATTCCAATTACCACTAAAATCTCTAGAACTTTACCATTTGAATTGATTATTGCCTT GGATTCTTCATTACAAGCAACTGGTCAATTATTCTTGGATGATGGTGAATCAATTCAAAC CTATGTTGATAATAAATACTCTTTCATTCAATTCGATGTTGTCTCCTCACCATCTTCATC TGCCTACAAATTACAATCAACCATTCTCAATAACAATTATAATGGTACCGCTTCTTTAAT CATTAATTCTATCCAAATCTACGGTTCGCCATCAGTTCAACAAGTCATTGTTAATGGTAG CCCAATCAATTCATTTAATGCTGTTTCNGATTCAACTCTCTCTGTTTCAAATTTACAACT GCTTTAGATGAATCCTT
Length of connected seq.	1207
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas