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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO236
Library CH
(Link to library)
Clone ID CHO236
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13092-1|Contig-U15758-1
Original site URL
Representative seq. ID CHO236P
(Link to Original site)
Representative DNA sequence 
>CHO236 (CHO236Q) /CSM/CH/CHO2-B/CHO236Q.Seq.d/
TATAAAAATTTTCATTGTTCAATAAGTTTATGTGCTTCGATTTTGATTAAATAAATATTA
ATAATATTATTTATTCTTTTTATTTTAAAATAAATTTTTTTTTTTTTTNTTTTAAAAAAA
AAAXXXXXXXXXXTATTCANAATCACCATTATCTTTATCTGATAATGGTATTGATATAAA
TGATAATGACAATAATGATAATATTAATAATAATCANAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAGTAATAATCAAAATAATTCACTAGTTAGTGAAGCAATTGA
AATGAATGTTTTATCAGATTCAGATAATGATGAAAATAATAATTTAATACCAAATATTCC
AATTAATGATAATAATATTATTATTCAAAATAATATAAGAAATAATAATAATAATAATTT
TAGCGATAATAATAATAATTATAATAATAATAATTATAATAATAATAATAATAATAATAA
TGATAATAATACGAATAATGATAATAATATAAATAATAATTCAAACGATATAAATGAGTC
AATCTCAGAGGAAACAACAATTGATTTAGTTCAAATGGAGTTACAAAATCCTTGGGTTGT
CATTGATTCATCCCCATTCCAAATTCAAGAAACGATGCCAGTTAGAAAGATCGTTTTTAT
GTTTATGATGTTGGGCGGTAATATTTTATATGTTACCAACAAAGGAAAATTAACTGGTGT
TGTTGCGAAAACGGAATTAGNGCATCAAAANANAATAACATAAACAT
sequence update 2002.10.25
Translated Amino Acid sequence 
*kfslfnkfmcfdfd*ININNIIYSFYFKINFFFFXFKKK---

---YSXSPLSLSDNGIDINDNDNNDNINNNXNNNNNNNNNNNNNNSNNQNNSLVSEAIEM
NVLSDSDNDENNNLIPNIPINDNNIIIQNNIRNNNNNNFSDNNNNYNNNNYNNNNNNNND
NNTNNDNNINNNSNDINESISEETTIDLVQMELQNPWVVIDSSPFQIQETMPVRKIVFMF
MMLGGNILYVTNKGKLTGVVAKTELXHQXXIT*t
Translated Amino Acid sequence (All Frames) 
Frame A:
yknfhcsislcasilik*iliilfilfilk*iffffxlkkk---

---YSXSPLSLSDNGIDINDNDNNDNINNNXNNNNNNNNNNNNNNSNNQNNSLVSEAIEM
NVLSDSDNDENNNLIPNIPINDNNIIIQNNIRNNNNNNFSDNNNNYNNNNYNNNNNNNND
NNTNNDNNINNNSNDINESISEETTIDLVQMELQNPWVVIDSSPFQIQETMPVRKIVFMF
MMLGGNILYVTNKGKLTGVVAKTELXHQXXIT*t

Frame B:
ikifivq*vyvlrf*lnky**yylfflf*nkffffxf*kk---

---ixnhhylylimvli*mimtimiiliiixiiiiiiiiiiiiiiviikiih*lvkqlk*
mfyqiqimmkiii*yqifqlmiiillfkii*eiiiiiilaiiiiiiiiiiiiiiiiiimi
iirimiii*iiiqti*msqsqrkqqli*fkwsykilglslihphskfkkrcqlersflcl
*cwavifymlptken*lvllrkrn*xikxx*hkh

Frame C:
*kfslfnkfmcfdfd*ININNIIYSFYFKINFFFFXFKKK---

---fxitiifi**wy*yk***q***y***sx****************sk*fts**sn*ne
cfirfr***k**fntkysn****yyysk*ykk*****f*r****l****l**********
*ye****yk**fkryk*vnlrgnnn*fssngvtkslgch*fipipnsrndas*kdrfyvy
dvgr*yficyqqrkinwcccengixaskxnnin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO236 (CHO236Q) /CSM/CH/CHO2-B/CHO236Q.Seq.d/                        472   e-132
CHR890 (CHR890Q) /CSM/CH/CHR8-D/CHR890Q.Seq.d/                        450   e-125
AHD260 (AHD260Q) /CSM/AH/AHD2-C/AHD260Q.Seq.d/                        450   e-125
SLJ712 (SLJ712Q) /CSM/SL/SLJ7-A/SLJ712Q.Seq.d/                        270   3e-71
VHI556 (VHI556Q) /CSM/VH/VHI5-C/VHI556Q.Seq.d/                        105   1e-21
VHO404 (VHO404Q) /CSM/VH/VHO4-A/VHO404Q.Seq.d/                         34   3.0
VFJ122 (VFJ122Q) /CSM/VF/VFJ1-A/VFJ122Q.Seq.d/                         34   3.0
VFH396 (VFH396Q) /CSM/VF/VFH3-D/VFH396Q.Seq.d/                         34   3.0
VFG840 (VFG840Q) /CSM/VF/VFG8-B/VFG840Q.Seq.d/                         34   3.0
VFA553 (VFA553Q) /CSM/VF/VFA5-C/VFA553Q.Seq.d/                         34   3.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL356599|AL356599.19 Human DNA sequence from clone RP11-545I5 on chromosome 6 Contains  the gene for a novel protein similar to KIAA1195, a novel gene, the  3' end of the gene for a novel protein similar to S. pombe Rad8 and  a CpG island.    44   3.7    1
BU869213|BU869213.1 M127D08 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    44   3.7    1
CA823751|CA823751.1 R30G07 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    44   3.7    1
BU881988|BU881988.1 UM70TB09 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    44   3.7    1
CV282873|CV282873.1 WS0185.B21_N08 PTxD-IL-N-A-9 Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA clone WS0185_N08 3', mRNA sequence.    44   3.7    1
CB833319|CB833319.1 R01D05 two-month-old roots from clone 'Beaupre' Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    44   3.7    1
BU882584|BU882584.1 UM79TF11 Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA 5 prime, mRNA sequence.    44   3.7    1
CQ680260|CQ680260.1 Sequence 25186 from Patent WO02070737.         44   3.7    1
CV275966|CV275966.1 WS0178.B21.1_D08 PTxD-NR-A-8 Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA clone WS0178_D08 3', mRNA sequence.    44   3.7    1
BX928758|BX928758.9 Zebrafish DNA sequence from clone DKEY-206M15 in linkage group 25.    42   14     1
dna update 2005. 8.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9VGH7) RecName: Full=Chloride channel protein 2;          Shor...    46   0.001
AE014297_1423(AE014297|pid:none) Drosophila melanogaster chromos...    46   0.001
AY119539_1(AY119539|pid:none) Drosophila melanogaster GH23529 fu...    46   0.001
(Q64347) RecName: Full=Chloride channel protein, skeletal muscle...    46   0.001
BT009973_1(BT009973|pid:none) Drosophila melanogaster RE62514 fu...    46   0.001
(Q54LQ4) RecName: Full=Chloride channel protein E;                     46   0.001
AF319614_1(AF319614|pid:none) Caenorhabditis elegans CLC-type ch...    45   0.002
BX927218_5(BX927218|pid:none) Zebrafish DNA sequence from clone ...    45   0.002
(Q9MZT1) RecName: Full=Chloride channel protein, skeletal muscle...    45   0.003
AF173172_1(AF173172|pid:none) Caenorhabditis elegans CLC chlorid...    44   0.004
protein update 2009. 4. 9
PSORT 

 psg: 0.84  gvh: 0.29  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for CHO236 is cyt
5' end seq. ID CHO236F
5' end seq. 
>CHO236F.Seq
TATAAAAATTTTCATTGTTCAATAAGTTTATGTGCTTCGATTTTGATTAAATAAATATTA
ATAATATTATTTATTCTTTTTATTTTAAAATAAATTTTTTTTTTTTTTNTTTTAAAAAAA
AAANNNNNNNNNN
Length of 5' end seq. 133
3' end seq. ID CHO236Z
3' end seq. 
>CHO236Z.Seq
NNNNNNNNNNTATTCANAATCACCATTATCTTTATCTGATAATGGTATTGATATAAATGA
TAATGACAATAATGATAATATTAATAATAATCANAATAATAATAATAATAATAATAATAA
TAATAATAATAATAATAGTAATAATCAAAATAATTCACTAGTTAGTGAAGCAATTGAAAT
GAATGTTTTATCAGATTCAGATAATGATGAAAATAATAATTTAATACCAAATATTCCAAT
TAATGATAATAATATTATTATTCAAAATAATATAAGAAATAATAATAATAATAATTTTAG
CGATAATAATAATAATTATAATAATAATAATTATAATAATAATAATAATAATAATAATGA
TAATAATACGAATAATGATAATAATATAAATAATAATTCAAACGATATAAATGAGTCAAT
CTCAGAGGAAACAACAATTGATTTAGTTCAAATGGAGTTACAAAATCCTTGGGTTGTCAT
TGATTCATCCCCATTCCAAATTCAAGAAACGATGCCAGTTAGAAAGATCGTTTTTATGTT
TATGATGTTGGGCGGTAATATTTTATATGTTACCAACAAAGGAAAATTAACTGGTGTTGT
TGCGAAAACGGAATTAGNGCATCAAAANANAATAACATAAACAT
Length of 3' end seq. 644
Connected seq. ID CHO236P
Connected seq. 
>CHO236P.Seq
TATAAAAATTTTCATTGTTCAATAAGTTTATGTGCTTCGATTTTGATTAAATAAATATTA
ATAATATTATTTATTCTTTTTATTTTAAAATAAATTTTTTTTTTTTTTNTTTTAAAAAAA
AAA----------TATTCANAATCACCATTATCTTTATCTGATAATGGTATTGATATAAA
TGATAATGACAATAATGATAATATTAATAATAATCANAATAATAATAATAATAATAATAA
TAATAATAATAATAATAATAGTAATAATCAAAATAATTCACTAGTTAGTGAAGCAATTGA
AATGAATGTTTTATCAGATTCAGATAATGATGAAAATAATAATTTAATACCAAATATTCC
AATTAATGATAATAATATTATTATTCAAAATAATATAAGAAATAATAATAATAATAATTT
TAGCGATAATAATAATAATTATAATAATAATAATTATAATAATAATAATAATAATAATAA
TGATAATAATACGAATAATGATAATAATATAAATAATAATTCAAACGATATAAATGAGTC
AATCTCAGAGGAAACAACAATTGATTTAGTTCAAATGGAGTTACAAAATCCTTGGGTTGT
CATTGATTCATCCCCATTCCAAATTCAAGAAACGATGCCAGTTAGAAAGATCGTTTTTAT
GTTTATGATGTTGGGCGGTAATATTTTATATGTTACCAACAAAGGAAAATTAACTGGTGT
TGTTGCGAAAACGGAATTAGNGCATCAAAANANAATAACATAAACAT
Length of connected seq. 757
Full length Seq ID -
Full length Seq. -
Length of full length seq. -