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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO229
Library CH
(Link to library)
Clone ID CHO229
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15356-1|Contig-U15914-1
Original site URL
Representative seq. ID CHO229P
(Link to Original site)
Representative DNA sequence 
>CHO229 (CHO229Q) /CSM/CH/CHO2-B/CHO229Q.Seq.d/
ATTTACTTTTTATTTATTTATTTATTTATTTATTCTTTTCTTTAATCTATTTCATCTTTT
ATTTATCTATCTGTCTAATCTAAAAAAAATATTATTAAATATTTTTATTAATTTCTTCTT
TTAAATTCCAATAAATTATTCATCCTTTTTTTAAAAAAAAAAXXXXXXXXXXAAAATCAT
TTCATTGTATTCAATGTTTGGAGTTATGCTGATAGTGCATCACGTCCAGATTTTTACACA
AACTATAATGTAAACTTACAATATCAAACCCAAGGAACTGGTATTTTATCAACACCAGGT
TTTAGTGTTGGTGCTTGGTTAAAACCAAATTCATCATCACCATCAAGCCCTGCTGATACA
ATTATGACCATTTTCCCAGGTGCACTTGGTAGTACATTACCTGGTATGATGACATTTGCC
GTAAGTTTATGTGAACCAACACCAAATCCAATCAATAAAGTTACATTGCCATCAAATGTA
ACTGGTTTATCAGCTATTCAATTCTATAAGAAAGGTGTAAATGTTTCATTCAATCCAGGT
GCTGTCGATGTTGATGTTGCAAAATTAGTATCATCCATTAAAGAGAGTCGTAGAATTATG
TCTTATCCACCAATGTCTCAATTATCAATTCCAGTTTTACCTGATGCTTCAATTAGTACT
GATGCTCAATTGGAATCATTTGTTAGAAATAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
iyflfiylfiysfl*sissfiylsv*skkniikyfy*FLLLNSNKLFILFLKKK---

---NHFIVFNVWSYADSASRPDFYTNYNVNLQYQTQGTGILSTPGFSVGAWLKPNSSSPS
SPADTIMTIFPGALGSTLPGMMTFAVSLCEPTPNPINKVTLPSNVTGLSAIQFYKKGVNV
SFNPGAVDVDVAKLVSSIKESRRIMSYPPMSQLSIPVLPDASISTDAQLESFVRNN
Translated Amino Acid sequence (All Frames) 
Frame A:
iyflfiylfiysfl*sissfiylsv*skkniikyfy*FLLLNSNKLFILFLKKK---

---kiislysmfgvmlivhhvqiftqtim*tynikpkelvfyqhqvlvlvlg*nqihhhh
qalliql*pfsqvhlvvhylv**hlp*vyvnqhqiqsiklhchqm*lvyqlfnsirkv*m
fhsiqvlsmlmlqn*yhplkrvvelclihqclnyqfqfylmlqlvlmlnwnhlleii

Frame B:
ftfylfiylfilffnlfhllfiylsnlkkillnifinfff*ipinyssff*kk---

---ksfhciqclelc**citsrflhkl*ckltisnprnwyfintrf*cwclvktkfiiti
kpc*ynydhfprctw*yitwyddicrkfm*tntksnq*syiaikcnwfisysil*erckc
fiqsrccrc*cckisiih*res*nyvlstnvsiinssft*cfn*y*csigiic*k*

Frame C:
llfiylfiylffsliyfifylsicli*kkyy*ifllissfkfq*iihpffkkk---

---NHFIVFNVWSYADSASRPDFYTNYNVNLQYQTQGTGILSTPGFSVGAWLKPNSSSPS
SPADTIMTIFPGALGSTLPGMMTFAVSLCEPTPNPINKVTLPSNVTGLSAIQFYKKGVNV
SFNPGAVDVDVAKLVSSIKESRRIMSYPPMSQLSIPVLPDASISTDAQLESFVRNN
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO229 (CHO229Q) /CSM/CH/CHO2-B/CHO229Q.Seq.d/                       1035   0.0
CHF224 (CHF224Q) /CSM/CH/CHF2-A/CHF224Q.Seq.d/                        983   0.0
SSK318 (SSK318Q) /CSM/SS/SSK3-A/SSK318Q.Seq.d/                        961   0.0
CHN868 (CHN868Q) /CSM/CH/CHN8-C/CHN868Q.Seq.d/                        886   0.0
SLA754 (SLA754Q) /CSM/SL/SLA7-C/SLA754Q.Seq.d/                        731   0.0
FC-AO05 (FC-AO05Q) /CSM/FC/FC-AO/FC-AO05Q.Seq.d/                      404   e-112
CHI474 (CHI474Q) /CSM/CH/CHI4-D/CHI474Q.Seq.d/                        402   e-111
CFF781 (CFF781Q) /CSM/CF/CFF7-D/CFF781Q.Seq.d/                         44   0.003
AFH201 (AFH201Q) /CSM/AF/AFH2-A/AFH201Q.Seq.d/                         42   0.011
SHH870 (SHH870Q) /CSM/SH/SHH8-C/SHH870Q.Seq.d/                         40   0.044
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116918|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence.    38   0.001  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.001  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.002  13
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   0.015  17
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    36   0.029  9
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   0.032  11
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   0.032  11
BA000003|BA000003.2 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence.    38   0.032  11
AL008627|AL008627.1 Human DNA sequence from clone RP1-130G2 on chromosome 6p22.2-22.3  Contains the 3' end of the gene for a novel protein, a ribosomal  protein L29 (RPL29) (HIP, HUMRPL29) pseudogene and a CpG island.    38   0.047  7
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4.    34   0.076  11
dna update 2005. 8.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM286690_2710(AM286690|pid:none) Alcanivorax borkumensis SK2, co...    42   0.017
AE017285_2367(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...    38   0.32
CP000588_114(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...    37   0.54
CP000514_599(CP000514|pid:none) Marinobacter aquaeolei VT8, comp...    37   0.70
AM711867_913(AM711867|pid:none) Clavibacter michiganensis subsp....    36   0.92
CU459003_1387(CU459003|pid:none) Magnetospirillum gryphiswaldens...    35   2.7
CP000115_2269(CP000115|pid:none) Nitrobacter winogradskyi Nb-255...    34   3.5
AP009385_1857(AP009385|pid:none) Burkholderia multivorans ATCC 1...    34   3.5
CP000854_969(CP000854|pid:none) Mycobacterium marinum M, complet...    34   4.6
CP001053_2958(CP001053|pid:none) Burkholderia phytofirmans PsJN ...    33   6.0
protein update 2008.11. 5
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHO229 is cyt
5' end seq. ID CHO229F
5' end seq. 
>CHO229F.Seq
ATTTACTTTTTATTTATTTATTTATTTATTTATTCTTTTCTTTAATCTATTTCATCTTTT
ATTTATCTATCTGTCTAATCTAAAAAAAATATTATTAAATATTTTTATTAATTTCTTCTT
TTAAATTCCAATAAATTATTCATCCTTTTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 172
3' end seq. ID CHO229Z
3' end seq. 
>CHO229Z.Seq
NNNNNNNNNNAAAATCATTTCATTGTATTCAATGTTTGGAGTTATGCTGATAGTGCATCA
CGTCCAGATTTTTACACAAACTATAATGTAAACTTACAATATCAAACCCAAGGAACTGGT
ATTTTATCAACACCAGGTTTTAGTGTTGGTGCTTGGTTAAAACCAAATTCATCATCACCA
TCAAGCCCTGCTGATACAATTATGACCATTTTCCCAGGTGCACTTGGTAGTACATTACCT
GGTATGATGACATTTGCCGTAAGTTTATGTGAACCAACACCAAATCCAATCAATAAAGTT
ACATTGCCATCAAATGTAACTGGTTTATCAGCTATTCAATTCTATAAGAAAGGTGTAAAT
GTTTCATTCAATCCAGGTGCTGTCGATGTTGATGTTGCAAAATTAGTATCATCCATTAAA
GAGAGTCGTAGAATTATGTCTTATCCACCAATGTCTCAATTATCAATTCCAGTTTTACCT
GATGCTTCAATTAGTACTGATGCTCAATTGGAATCATTTGTTAGAAATAATA
Length of 3' end seq. 532
Connected seq. ID CHO229P
Connected seq. 
>CHO229P.Seq
ATTTACTTTTTATTTATTTATTTATTTATTTATTCTTTTCTTTAATCTATTTCATCTTTT
ATTTATCTATCTGTCTAATCTAAAAAAAATATTATTAAATATTTTTATTAATTTCTTCTT
TTAAATTCCAATAAATTATTCATCCTTTTTTTAAAAAAAAAA----------AAAATCAT
TTCATTGTATTCAATGTTTGGAGTTATGCTGATAGTGCATCACGTCCAGATTTTTACACA
AACTATAATGTAAACTTACAATATCAAACCCAAGGAACTGGTATTTTATCAACACCAGGT
TTTAGTGTTGGTGCTTGGTTAAAACCAAATTCATCATCACCATCAAGCCCTGCTGATACA
ATTATGACCATTTTCCCAGGTGCACTTGGTAGTACATTACCTGGTATGATGACATTTGCC
GTAAGTTTATGTGAACCAACACCAAATCCAATCAATAAAGTTACATTGCCATCAAATGTA
ACTGGTTTATCAGCTATTCAATTCTATAAGAAAGGTGTAAATGTTTCATTCAATCCAGGT
GCTGTCGATGTTGATGTTGCAAAATTAGTATCATCCATTAAAGAGAGTCGTAGAATTATG
TCTTATCCACCAATGTCTCAATTATCAATTCCAGTTTTACCTGATGCTTCAATTAGTACT
GATGCTCAATTGGAATCATTTGTTAGAAATAATA
Length of connected seq. 684
Full length Seq ID -
Full length Seq. -
Length of full length seq. -