CHO194
Library CH
(Link to library)
Clone ID CHO194
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14004-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHO194 (CHO194Q) /CSM/CH/CHO1-D/CHO194Q.Seq.d/
ATTATTATTACTTTATTTTTTTTTTTATTAAATAATTATTTTTTATTAACATTTTAAAAT
TTTTTTTTTTTTTTTTTAAAAAANTTTTAANNATTNAANTTTTAAAAANGGXXXXXXXXX
X
sequence update 2002.10.25
Translated Amino Acid sequence
yyyfifffik*LFFINILKFFFFFFKKXLXIXXLKX---


Translated Amino Acid sequence (All Frames)
Frame A:
iiitlfffllnnyflltf*nffffflkxf*xxxf*k---


Frame B:
llllyfffy*iiify*hfkifffff*kxfxxxxfkx---


Frame C:
yyyfifffik*LFFINILKFFFFFFKKXLXIXXLKX---


Homology vs CSM-cDNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 97611
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 121
length of database: 80,480,566
effective HSP length: 17
effective length of query: 104
effective length of database: 78,821,179
effective search space: 8197402616
effective search space used: 8197402616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)








Dictyostelium discoideum cDNA Project Home



own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 45759184
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 121
length of database: _,504,085,797
effective HSP length: 21
effective length of query: 100
effective length of database: ^,543,142,933
effective search space: 4654314293300
effective search space used: 4654314293300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2005. 8.13
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 21,551,613
protein update 2009. 4. 9
PSORT

psg: 0.80 gvh: 0.45 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: mitochondrial
28.0 %: nuclear
4.0 %: peroxisomal

>> prediction for CHO194 is cyt

5' end seq. ID CHO194F
5' end seq.
>CHO194F.Seq
ATTATTATTACTTTATTTTTTTTTTTATTAAATAATTATTTTTTATTAACATTTTAAAAT
TTTTTTTTTTTTTTTTTAAAAAANTTTTAANNATTNAANTTTTAAAAANGGNNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -