>CHO178 (CHO178Q) /CSM/CH/CHO1-D/CHO178Q.Seq.d/
GATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATA
ATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAATTAAAAAAA
AAAXXXXXXXXXXTGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCAT
GTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAAT
GCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTA
CCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAA
TTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATT
GGTATTGTATTGAAGCTCAATGCGATGCAAAATATGGTTGCATTCAATTCGATAGAAGAT
GTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTA
AAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAG
CTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAG
GTGCTGCTATATTTGCGGGTAAGAAAGGTTAT

*fklkiyyiniykyilnknnnkinli**KIFLRKKKIKKK---

---GKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTL
EGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCA
PDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGA
AIFAGKKGY

Frame A:
dnsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkklkkk---

---w*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlyl
grwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssmrckiwlhsir*kmc
s****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrc
cyicg*erl

Frame B:
iiqiknilykyi*iyik*k***nkfniiknffekkkn*kk---

---GKCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTL
EGGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCA
PDNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGA
AIFAGKKGY

Frame C:
*fklkiyyiniykyilnknnnkinli**KIFLRKKKIKKK---

---vnv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpw
kvvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnamqnmvafnsiedvl
liivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*vl
lylrvrkv

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO178 (CHO178Q) /CSM/CH/CHO1-D/CHO178Q.Seq.d/                       1108   0.0
SSD152 (SSD152Q) /CSM/SS/SSD1-C/SSD152Q.Seq.d/                       1100   0.0
SHK734 (SHK734Q) /CSM/SH/SHK7-B/SHK734Q.Seq.d/                       1100   0.0
SHG518 (SHG518Q) /CSM/SH/SHG5-A/SHG518Q.Seq.d/                       1100   0.0
SHG146 (SHG146Q) /CSM/SH/SHG1-B/SHG146Q.Seq.d/                       1100   0.0
SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/                       1100   0.0
SHE102 (SHE102Q) /CSM/SH/SHE1-A/SHE102Q.Seq.d/                       1100   0.0
SHD679 (SHD679Q) /CSM/SH/SHD6-D/SHD679Q.Seq.d/                       1100   0.0
SHC446 (SHC446Q) /CSM/SH/SHC4-B/SHC446Q.Seq.d/                       1100   0.0
SHB718 (SHB718Q) /CSM/SH/SHB7-A/SHB718Q.Seq.d/                       1100   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   9e-07  1
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   0.002  4
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.053  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.053  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.053  1
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.053  1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.22   2
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis.    38   0.67   2
AP005912|AP005912.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23.    46   0.83   1
AC017182|AC017182.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    46   0.83   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                351   1e-95
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   155   1e-36
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   152   9e-36
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   142   9e-33
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                133   5e-30
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                113   6e-24
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 97   3e-19
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    73   9e-12
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    68   2e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    67   6e-10

 psg: 0.51  gvh: 0.50  alm: 0.16  top: 0.73  tms: 0.07  mit: 0.34  mip: 0.02
 nuc: 0.04  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: plasma membrane
	  8.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHO178 is cyt

>CHO178F.Seq
GATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATA
ATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAATTAAAAAAA
AAANNNNNNNNNN

>CHO178Z.Seq
NNNNNNNNNNTGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTA
CTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCA
CTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCT
TGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTG
GTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGT
ATTGTATTGAAGCTCAATGCGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTG
CTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAA
ATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTG
CTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTG
CTGCTATATTTGCGGGTAAGAAAGGTTAT

>CHO178P.Seq
GATAATTCAAATTAAAAATATATTATATAAATATATATAAATATATATTAAATAAAAATA
ATAATAAAATAAATTTAATATAATAAAAAATTTTTTTGAGAAAAAAAAAAATTAAAAAAA
AAA----------TGGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCAT
GTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAAT
GCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTA
CCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAA
TTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATT
GGTATTGTATTGAAGCTCAATGCGATGCAAAATATGGTTGCATTCAATTCGATAGAAGAT
GTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTA
AAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAG
CTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAG
GTGCTGCTATATTTGCGGGTAAGAAAGGTTAT