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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO161
Library CH
(Link to library)
Clone ID CHO161
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11883-1
Original site URL
Representative seq. ID CHO161P
(Link to Original site)
Representative DNA sequence 
>CHO161 (CHO161Q) /CSM/CH/CHO1-C/CHO161Q.Seq.d/
TACAAAATTTATATATATATATAATATTTTTAAATAATTATATTTTTTTTTTAAAATTNA
AAATTAAAAAATTAAAAAGGGATTCCATGTTAAATNCAAAAGTTTTTTATGGTTTAAAXX
XXXXXXXXTNATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATATCCAAGGAAGTATATCAACATTACAATATGAAGAAATTAAAAAGATATTTTAT
AAATTATATAAAGAAATGAATGAAGAGAAAGAGGAACAAAAAGTTGTTAAAATATTTTCA
GTTAAAAAGAGTCAACACCTTTGTAATTTAACAGTATNTTCAAAACAAACATTATCTTAT
TTAGCACAGTTTTTAATACCACAAATGTTTCCACAATTGGGTAGAGGTCAACATTTTGAA
TTATATTGGATAGATAAAAGAAATGAATATTGTCAAGTATTTTACAAAGATTTGGACCAA
CTCATATTCTCATTTATTTGTAATTTAGATGTATTTGGTATTCAAACATTAACCGAACAA
CAAGCCTCTACAAAATTATTAACTTTTGTCATTTCAAAATCAGGTGAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
QNLYIYIIFLNNYIFFLKXKIKKLKRDSMLNXKVFYGL---

---XNNNNNNNNNNNNNNNNNNIQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVKIFS
VKKSQHLCNLTVXSKQTLSYLAQFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKDLDQ
LIFSFICNLDVFGIQTLTEQQASTKLLTFVISKSGEK
Translated Amino Acid sequence (All Frames) 
Frame A:
ykiyiyi*yf*iiifff*nxklkn*kgipc*xqkffmv*---

---x******************yprkyiniti*rn*kdil*ii*rne*rergtksc*nif
s*kestpl*fnsxfktniilfstvfnttnvstig*rstf*iildr*kk*ilssilqrfgp
thiliyl*frciwysninrttslykiinfchfkir*k

Frame B:
tkfiyiynifk*lyfffkixn*kikkgfhvkxksflwfk---

---XNNNNNNNNNNNNNNNNNNIQGSISTLQYEEIKKIFYKLYKEMNEEKEEQKVVKIFS
VKKSQHLCNLTVXSKQTLSYLAQFLIPQMFPQLGRGQHFELYWIDKRNEYCQVFYKDLDQ
LIFSFICNLDVFGIQTLTEQQASTKLLTFVISKSGEK

Frame C:
QNLYIYIIFLNNYIFFLKXKIKKLKRDSMLNXKVFYGL---

---iiiiiiiiiiiiiiiiiiiskevyqhynmkklkryfinyikk*mkrkrnkkllkyfq
lkrvntfvi*qyxqnkhyli*hsf*yhkcfhnwvevnilnyig*ikemnivkyftkiwtn
syshlfvi*mylvfkh*pnnkplqny*llsfqnqvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO161 (CHO161Q) /CSM/CH/CHO1-C/CHO161Q.Seq.d/                        795   0.0
CHM696 (CHM696Q) /CSM/CH/CHM6-D/CHM696Q.Seq.d/                         44   0.002
VFI461 (VFI461Q) /CSM/VF/VFI4-C/VFI461Q.Seq.d/                         42   0.009
SSC426 (SSC426Q) /CSM/SS/SSC4-B/SSC426Q.Seq.d/                         42   0.009
AHR267 (AHR267Q) /CSM/AH/AHR2-C/AHR267Q.Seq.d/                         42   0.009
AHR215 (AHR215Q) /CSM/AH/AHR2-A/AHR215Q.Seq.d/                         42   0.009
AFN752 (AFN752Q) /CSM/AF/AFN7-C/AFN752Q.Seq.d/                         42   0.009
VHL451 (VHL451Q) /CSM/VH/VHL4-C/VHL451Q.Seq.d/                         40   0.037
VHK768 (VHK768Q) /CSM/VH/VHK7-C/VHK768Q.Seq.d/                         40   0.037
VHD683 (VHD683Q) /CSM/VH/VHD6-D/VHD683Q.Seq.d/                         40   0.037
own update 2004. 8.20
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.   773   0.0    7
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    46   2e-11  5
AX344564|AX344564.1 Sequence 15 from Patent WO0200932.             36   2e-10  16
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    50   8e-10  5
AC005505|AC005505.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    46   9e-10  6
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC.    44   1e-09  13
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    52   2e-09  5
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            52   3e-09  4
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence.    46   6e-09  7
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46   8e-09  6
dna update 2005. 8.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_4(AC116921|pid:none) Dictyostelium discoideum chromosom...   268   1e-70
FJ483517_4(FJ483517|pid:none) Bunostomum phlebotomum mitochondri...    33   7.2
protein update 2009. 4. 9
PSORT 

 psg: 0.93  gvh: 0.33  alm: 0.35  top: 0.80  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHO161 is mit
5' end seq. ID CHO161F
5' end seq. 
>CHO161F.Seq
TACAAAATTTATATATATATATAATATTTTTAAATAATTATATTTTTTTTTTAAAATTNA
AAATTAAAAAATTAAAAAGGGATTCCATGTTAAATNCAAAAGTTTTTTATGGTTTAAANN
NNNNNNNN
Length of 5' end seq. 128
3' end seq. ID CHO161Z
3' end seq. 
>CHO161Z.Seq
NNNNNNNNNNTNATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATATCCAAGGAAGTATATCAACATTACAATATGAAGAAATTAAAAAGATATTTT
ATAAATTATATAAAGAAATGAATGAAGAGAAAGAGGAACAAAAAGTTGTTAAAATATTTT
CAGTTAAAAAGAGTCAACACCTTTGTAATTTAACAGTATNTTCAAAACAAACATTATCTT
ATTTAGCACAGTTTTTAATACCACAAATGTTTCCACAATTGGGTAGAGGTCAACATTTTG
AATTATATTGGATAGATAAAAGAAATGAATATTGTCAAGTATTTTACAAAGATTTGGACC
AACTCATATTCTCATTTATTTGTAATTTAGATGTATTTGGTATTCAAACATTAACCGAAC
AACAAGCCTCTACAAAATTATTAACTTTTGTCATTTCAAAATCAGGTGAAAAA
Length of 3' end seq. 473
Connected seq. ID CHO161P
Connected seq. 
>CHO161P.Seq
TACAAAATTTATATATATATATAATATTTTTAAATAATTATATTTTTTTTTTAAAATTNA
AAATTAAAAAATTAAAAAGGGATTCCATGTTAAATNCAAAAGTTTTTTATGGTTTAAA--
--------TNATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATATCCAAGGAAGTATATCAACATTACAATATGAAGAAATTAAAAAGATATTTTAT
AAATTATATAAAGAAATGAATGAAGAGAAAGAGGAACAAAAAGTTGTTAAAATATTTTCA
GTTAAAAAGAGTCAACACCTTTGTAATTTAACAGTATNTTCAAAACAAACATTATCTTAT
TTAGCACAGTTTTTAATACCACAAATGTTTCCACAATTGGGTAGAGGTCAACATTTTGAA
TTATATTGGATAGATAAAAGAAATGAATATTGTCAAGTATTTTACAAAGATTTGGACCAA
CTCATATTCTCATTTATTTGTAATTTAGATGTATTTGGTATTCAAACATTAACCGAACAA
CAAGCCTCTACAAAATTATTAACTTTTGTCATTTCAAAATCAGGTGAAAAA
Length of connected seq. 581
Full length Seq ID -
Full length Seq. -
Length of full length seq. -