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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHO149
Library CH
(Link to library)
Clone ID CHO149
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11882-1
Original site URL
Representative seq. ID CHO149P
(Link to Original site)
Representative DNA sequence 
>CHO149 (CHO149Q) /CSM/CH/CHO1-C/CHO149Q.Seq.d/
GATTTTTTTNCTATATTGTACTTTAAATAAATAAATAAAATAAAATAAAATAAATTAAAA
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATCCAACCATT
TTTTTGTATTGTACTTTAATATATAAATATTATTATTAAAAAAAAAAXXXXXXXXXXCAN
AAGAATCNATTGAATCNGAAGAAACTGNAACNTCNAATTTTGAAACAAGTCCNGCNATTT
CCAAAATCCCCNATCAACTTTGATCCNACTTTTNCNAATATTAATGNATTTTTTGNCGAT
GAAAAAGCCTCCCAAAAAGGNGGNAAACNAAATNAATTNC
sequence update 2002.10.25
Translated Amino Acid sequence 
ifxlyctlnk*ik*nkin*nkik*nkik*nkik*nkiqpffcivl*YINIIIKKK---

---XKNXLNXKKLXXXILKQVXXFPKSPINFDPTFXNINXFFXDEKASQKGGKXNXX
Translated Amino Acid sequence (All Frames) 
Frame A:
dffxilyfk*inkik*nklk*nkik*nkik*nkik*nptiflyctliykyyy*kk---

---XKNXLNXKKLXXXILKQVXXFPKSPINFDPTFXNINXFFXDEKASQKGGKXNXX

Frame B:
ifxlyctlnk*ik*nkin*nkik*nkik*nkik*nkiqpffcivl*YINIIIKKK---

---xrix*ixrnxnxxf*nksxxfqnpxstlixlxxilmxflxmkkppkkxxnxxnx

Frame C:
ffxyivl*ink*nkik*ikik*nkik*nkik*nkiksnhffvlyfni*illlkkk---

---xesieseetxtsnfetspaiskipxql*sxfxxy*xifxr*kslpkrxxtkxi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO149 (CHO149Q) /CSM/CH/CHO1-C/CHO149Q.Seq.d/                        212   3e-54
SLE608 (SLE608Q) /CSM/SL/SLE6-A/SLE608Q.Seq.d/                        149   3e-35
SHD523 (SHD523Q) /CSM/SH/SHD5-A/SHD523Q.Seq.d/                         38   0.083
SSK740 (SSK740Q) /CSM/SS/SSK7-B/SSK740Q.Seq.d/                         36   0.33
SSD371 (SSD371Q) /CSM/SS/SSD3-C/SSD371Q.Seq.d/                         36   0.33
SSC571 (SSC571Q) /CSM/SS/SSC5-C/SSC571Q.Seq.d/                         36   0.33
SFL475 (SFL475Q) /CSM/SF/SFL4-D/SFL475Q.Seq.d/                         36   0.33
SFL140 (SFL140Q) /CSM/SF/SFL1-B/SFL140Q.Seq.d/                         36   0.33
VSC514 (VSC514Q) /CSM/VS/VSC5-A/VSC514Q.Seq.d/                         34   1.3
VSA774 (VSA774Q) /CSM/VS/VSA7-D/VSA774Q.Seq.d/                         34   1.3
own update 2002.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U79731|U79731.1 Plasmodium berghei extrachromosomal plastid PB-1, ORF470 gene, partial cds, tRNA-Thr, large subunit ribosomal RNA, tRNA-Met, tRNA-Arg, tRNA-Val, tRNA-Arg, tRNA-Leu, tRNA-Asn, tRNA-Ala, and small subunit ribosomal RNA genes, complete sequences.    38   0.054  2
CZ523260|CZ523260.1 GMW2-64B5a.g2 GMW2 Glycine max genomic, genomic survey sequence.    36   0.13   2
CZ512644|CZ512644.1 GMW2-64B5a.g1 GMW2 Glycine max genomic, genomic survey sequence.    36   0.13   2
X60707|X60707.1 P.anserina mitochondrion plasmid pAL2-1 for DNA polymerase and RNA polymerase.    36   0.28   2
AC091873|AC091873.2 Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence.    46   0.40   1
AC140171|AC140171.3 Homo sapiens chromosome 5 clone RP11-804N13, complete sequence.    46   0.40   1
AC141463|AC141463.1 Homo sapiens chromosome 5 clone RP11-773N8, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   0.40   1
AC140148|AC140148.1 Homo sapiens chromosome 5 clone RP11-580P10, WORKING DRAFT SEQUENCE, 35 unordered pieces.    46   0.40   1
BH551437|BH551437.1 BOHOX30TF BOHO Brassica oleracea genomic clone BOHOX30, DNA sequence.    46   0.40   1
AC109452|AC109452.2 Homo sapiens chromosome 5 clone RP11-198A9, WORKING DRAFT SEQUENCE, 7 ordered pieces.    46   0.40   1
dna update 2005. 8.11
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 185,526,803
protein update 2009. 4. 9
PSORT 

 psg: 0.53  gvh: 0.37  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CHO149 is cyt
5' end seq. ID CHO149F
5' end seq. 
>CHO149F.Seq
GATTTTTTTNCTATATTGTACTTTAAATAAATAAATAAAATAAAATAAAATAAATTAAAA
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATCCAACCATT
TTTTTGTATTGTACTTTAATATATAAATATTATTATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 177
3' end seq. ID CHO149Z
3' end seq. 
>CHO149Z.Seq
NNNNNNNNNNCANAAGAATCNATTGAATCNGAAGAAACTGNAACNTCNAATTTTGAAACA
AGTCCNGCNATTTCCAAAATCCCCNATCAACTTTGATCCNACTTTTNCNAATATTAATGN
ATTTTTTGNCGATGAAAAAGCCTCCCAAAAAGGNGGNAAACNAAATNAATTNC
Length of 3' end seq. 173
Connected seq. ID CHO149P
Connected seq. 
>CHO149P.Seq
GATTTTTTTNCTATATTGTACTTTAAATAAATAAATAAAATAAAATAAAATAAATTAAAA
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATCCAACCATT
TTTTTGTATTGTACTTTAATATATAAATATTATTATTAAAAAAAAAA----------CAN
AAGAATCNATTGAATCNGAAGAAACTGNAACNTCNAATTTTGAAACAAGTCCNGCNATTT
CCAAAATCCCCNATCAACTTTGATCCNACTTTTNCNAATATTAATGNATTTTTTGNCGAT
GAAAAAGCCTCCCAAAAAGGNGGNAAACNAAATNAATTNC
Length of connected seq. 330
Full length Seq ID -
Full length Seq. -
Length of full length seq. -