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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO143
Library CH
(Link to library)
Clone ID CHO143
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15683-1
Original site URL
Representative seq. ID CHO143P
(Link to Original site)
Representative DNA sequence 
>CHO143 (CHO143Q) /CSM/CH/CHO1-B/CHO143Q.Seq.d/
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGGGGGTTTTNCCCCNAANNAAAAAXXXXXXXXXXCACTACAAAAGTAC
CAGAACCATCATTCAATCAAGAGGTATTAGATACATTATTAAGTATGGATTTCCCCATTG
GTTCGTTGTAAAAAGGCATTATTAGCAACTGGTGGTAAAGATGCTGAATTGGCAATGAAT
TGGATATTTGAACATACTGAAGATCCTGATATTGATATTGAACAAACACCTGTTAATAAC
AACAACAACAACAACAATAGTAGTAATAGTAATGATAAACTTTTTGTATTTAATTCACAA
GATGTTGATAATATTATTGGTATGGGTTTCACAGATTCTCAAGCAAAATTAGCACTTAAA
AATACAAAAGGTAATCTTGAACGTGCTGCAGATTGGTTATTTAGTCATATCGATAACTTG
GATGAATTGGTTGCAAAGGATAATGCTTCCACTTCATCAATTAATCCTTCCTTAATTCCT
CAATCAACAACTTCACTTCAACCAGTCAGTGACGGTGTTGGTAAATATGAATTATTAGGT
TTCATCTCTCATTTAGGTAATAATGTTACATGTGGTCATTATGTTTGTCANTATTAAAAA
GAATAATAGATGGATTAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
llktptnththivylhfiiyi*IYTNKYNIKKKKKKKKKKKKKGGVXPXXK---

---HYKSTRTIIQSRGIRYIIKYGFPHWFVVKRHY*qlvvkmlnwq*igylnilkilili
lnkhllittttttivvivminflylihkmliillvwvsqilkqn*hlkiqkvilnvlqig
ylvisitwmnwlqrimlplhqlilp*flnqqlhfnqsvtvlvnmny*vssli*vimlhvv
imfvxikknnrwin
Translated Amino Acid sequence (All Frames) 
Frame A:
iiknshkhthshciftlynlyiniyk*iqykkkkkkkkkkkkkrggfxpxxk---

---HYKSTRTIIQSRGIRYIIKYGFPHWFVVKRHY*qlvvkmlnwq*igylnilkilili
lnkhllittttttivvivminflylihkmliillvwvsqilkqn*hlkiqkvilnvlqig
ylvisitwmnwlqrimlplhqlilp*flnqqlhfnqsvtvlvnmny*vssli*vimlhvv
imfvxikknnrwin

Frame B:
llktptnththivylhfiiyi*IYTNKYNIKKKKKKKKKKKKKGGVXPXXK---

---ttkvpepsfnqevldtllsmdfpigsl*kgiisnww*rc*igneldi*ty*rs*y*y
*tntc**qqqqqq*******tfci*ftrc**yywygfhrfsskist*kykr*s*tccrlv
i*syr*lg*igckg*cfhfin*sflnssinnftstsq*rcw*i*iirfhlsfr**cymws
lclsxlkriidgl

Frame C:
y*klpqthtltlyiytl*fiykyiqinti*kkkkkkkkkkkkkggfxpxxk---

---lqkyqnhhsikry*ihy*vwisplvrckkallatggkdaelamnwifehtedpdidi
eqtpvnnnnnnnnssnsndklfvfnsqdvdniigmgftdsqaklalkntkgnleraadwl
fshidnldelvakdnastssinpslipqsttslqpvsdgvgkyellgfishlgnnvtcgh
yvcxy*ke**md*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO143 (CHO143Q) /CSM/CH/CHO1-B/CHO143Q.Seq.d/                        712   0.0
VHO311 (VHO311Q) /CSM/VH/VHO3-A/VHO311Q.Seq.d/                        700   0.0
VHD881 (VHD881Q) /CSM/VH/VHD8-D/VHD881Q.Seq.d/                        700   0.0
VHA850 (VHA850Q) /CSM/VH/VHA8-C/VHA850Q.Seq.d/                        700   0.0
VHA364 (VHA364Q) /CSM/VH/VHA3-C/VHA364Q.Seq.d/                        700   0.0
SHL878 (SHL878Q) /CSM/SH/SHL8-D/SHL878Q.Seq.d/                        700   0.0
SHG367 (SHG367Q) /CSM/SH/SHG3-C/SHG367Q.Seq.d/                        700   0.0
CHQ508 (CHQ508Q) /CSM/CH/CHQ5-A/CHQ508Q.Seq.d/                        700   0.0
CHM240 (CHM240Q) /CSM/CH/CHM2-B/CHM240Q.Seq.d/                        700   0.0
AHP783 (AHP783Q) /CSM/AH/AHP7-D/AHP783Q.Seq.d/                        700   0.0
own update 2002.10. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U48271|U48271.1 Dictyostelium discoideum UbpA deubiquitinase mRNA, complete cds.   652   0.0    4
CF778956|CF778956.1 tad24h03.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:UBP5_HUMAN P45974 UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 5 ;, mRNA sequence.    50   5e-05  2
CC140627|CC140627.1 NDL.31I22.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.31I22, DNA sequence.    52   0.014  1
BX323465|BX323465.7 Zebrafish DNA sequence from clone DKEYP-9C6 in linkage group 14.    34   0.015  8
AC111921|AC111921.3 Rattus norvegicus clone CH230-23K21, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    42   0.027  5
AC157264|AC157264.2 Rhinolophus ferrumequinum clone VMRC7-284G1, WORKING DRAFT SEQUENCE, 3 ordered pieces.    32   0.039  8
AX392735|AX392735.1 Sequence 25 from Patent WO0212526.             32   0.040  8
AC013265|AC013265.7 Homo sapiens BAC clone RP11-197H3 from 2, complete sequence.    38   0.054  6
CG193009|CG193009.1 PUEDM06TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa211B11, genomic survey sequence.    34   0.056  3
CG193006|CG193006.1 PUEDM06TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa211B11, genomic survey sequence.    34   0.057  3
dna update 2005. 8.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54201) RecName: Full=Ubiquitin carboxyl-terminal hydrolase A; ...   292   6e-78
BC079778_1(BC079778|pid:none) Xenopus laevis MGC86287 protein, m...   118   2e-25
(P56399) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   111   2e-23
(Q5R407) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   111   2e-23
S68227(S68227;S74295;G02070) ubiquitin thiolesterase (EC 3.1.2.1...   111   2e-23
AK154008_1(AK154008|pid:none) Mus musculus 2 days neonate thymus...   111   2e-23
AY892188_1(AY892188|pid:none) Synthetic construct Homo sapiens c...   111   2e-23
BC004889_1(BC004889|pid:none) Homo sapiens ubiquitin specific pe...   111   2e-23
(P45974) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; ...   111   2e-23
BT045992_1(BT045992|pid:none) Salmo salar clone ssal-rgf-538-245...   105   1e-21
protein update 2009. 4. 9
PSORT 

 psg: 0.03  gvh: 0.22  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.65  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHO143 is nuc
5' end seq. ID CHO143F
5' end seq. 
>CHO143F.Seq
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGGGGGTTTTNCCCCNAANNAAAAANNNNNNNNNN
Length of 5' end seq. 166
3' end seq. ID CHO143Z
3' end seq. 
>CHO143Z.Seq
NNNNNNNNNNCACTACAAAAGTACCAGAACCATCATTCAATCAAGAGGTATTAGATACAT
TATTAAGTATGGATTTCCCCATTGGTTCGTTGTAAAAAGGCATTATTAGCAACTGGTGGT
AAAGATGCTGAATTGGCAATGAATTGGATATTTGAACATACTGAAGATCCTGATATTGAT
ATTGAACAAACACCTGTTAATAACAACAACAACAACAACAATAGTAGTAATAGTAATGAT
AAACTTTTTGTATTTAATTCACAAGATGTTGATAATATTATTGGTATGGGTTTCACAGAT
TCTCAAGCAAAATTAGCACTTAAAAATACAAAAGGTAATCTTGAACGTGCTGCAGATTGG
TTATTTAGTCATATCGATAACTTGGATGAATTGGTTGCAAAGGATAATGCTTCCACTTCA
TCAATTAATCCTTCCTTAATTCCTCAATCAACAACTTCACTTCAACCAGTCAGTGACGGT
GTTGGTAAATATGAATTATTAGGTTTCATCTCTCATTTAGGTAATAATGTTACATGTGGT
CATTATGTTTGTCANTATTAAAAAGAATAATAGATGGATTAAT
Length of 3' end seq. 583
Connected seq. ID CHO143P
Connected seq. 
>CHO143P.Seq
ATTATTAAAAACTCCCACAAACACACACACTCACATTGTATATTTACACTTTATAATTTA
TATATAAATATATACAAATAAATACAATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGGGGGGGTTTTNCCCCNAANNAAAAA----------CACTACAAAAGTAC
CAGAACCATCATTCAATCAAGAGGTATTAGATACATTATTAAGTATGGATTTCCCCATTG
GTTCGTTGTAAAAAGGCATTATTAGCAACTGGTGGTAAAGATGCTGAATTGGCAATGAAT
TGGATATTTGAACATACTGAAGATCCTGATATTGATATTGAACAAACACCTGTTAATAAC
AACAACAACAACAACAATAGTAGTAATAGTAATGATAAACTTTTTGTATTTAATTCACAA
GATGTTGATAATATTATTGGTATGGGTTTCACAGATTCTCAAGCAAAATTAGCACTTAAA
AATACAAAAGGTAATCTTGAACGTGCTGCAGATTGGTTATTTAGTCATATCGATAACTTG
GATGAATTGGTTGCAAAGGATAATGCTTCCACTTCATCAATTAATCCTTCCTTAATTCCT
CAATCAACAACTTCACTTCAACCAGTCAGTGACGGTGTTGGTAAATATGAATTATTAGGT
TTCATCTCTCATTTAGGTAATAATGTTACATGTGGTCATTATGTTTGTCANTATTAAAAA
GAATAATAGATGGATTAAT
Length of connected seq. 729
Full length Seq ID -
Full length Seq. -
Length of full length seq. -