CHO122 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHO122
Library	CH (Link to library)
Clone ID	CHO122 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16351-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHO1-A/CHO122Q.Seq.d/
Representative seq. ID	CHO122P (Link to Original site)
Representative DNA sequence	>CHO122 (CHO122Q) /CSM/CH/CHO1-A/CHO122Q.Seq.d/ ATTTTTAAAGTGTCGTACCACTATCACATATCATCTAATCTAGTGACTTTAAATAGTAGT AATTATTTCTTTGTAGGAACTACACTATTTACAATTTATCAATAAAAAAAATAAAAAAAT AAATAATAAAAAAAATAAAAAATAATCAAAAAGACTTTTATTTTTCGTATCGTGTAATAA ATAAATATTGATATCGATAATAGTAATCAATCCTTTGAGGAGGAGAAGCGCACCTGTGTG ATTTTTAACAACAAATAAACAATATACCAAAAATAAAAAAAATAAAAAATAAAAAACAAT AAATTATAATAATAATAATAAAAAAAACAATCAAATCAGAAACCTTTATTTAATTTAAAT AATTTTAAATTTTTTTATTTTTTTTATTTTATTTTATTTCAAAACACTTTATATATATTT TTTTTAATTTTAATTTGTTTTTTTAAATTTAATTCATCATAATTAAATCTTAAACCAAAA ATAAATTTATTTTTAAATCTTTAAAATAATTATTTTATTTATTTATTTATTTATTTTTAA ACACAAACACACACACAAAAACACACACACACACACACACACAAAAATTCACACCCAAAC CACATTCCTCATTCATTCATTCGCTTATATTAAAAAATTAATAATAATTAAATAATTAAA TAAATATATXXXXXXXXXXAAAAGAAACCAAACCTTTATCGATATCCTTACCGACCGTTT ATCATCTTTAGAAAACTTACATTTAACACAATCTGCATTGTTATCAAATATGTTAAAAGA AAGAGGTATACCCGAATCTGAATATTCATTTTCTGAATATTCTGAACCTGAATTAATATC ATGTGCATTTTCAACTTCACCACCTTCTTCACCATTTTCAATTAGTGGTGGTGGCGGCAG TGGTGGTATTCCATCTCAAAGTGGTATAATTAAAAAACATAAAAAACCATCTGGATCATC AGGATATGGAGATAATAAAAATACTGCTGAAAGATTTTTAGAATGCTTTAATAGAGTAAT TAAAGTTTATAAAGAACATTATGGAAAGAAATCTTTTGAACTTTCAAAATTCATAAGTAG TTTAGATAATGATGAAAAAAAATATATTGGTTGATCTATTAGAATCTTTTACTTTTGATG AATCCTCTCAAGTAAAATCATTAGATAATAATGATCATTGTGAAGATTGTAATTGTGAAA CTTGTCCATATAAACAACAAGCTGAACAATTTATGTTATTATCTCCTGTAATTTGTTTCC CTTCACCTGCAATTAAATCTTCAAATAATACAAATAATACAAATAATACAAATAATACAA ATAATAATACTGTTGTAACAATTAATAATAAAAATAAAAACTTATAAAATAAAACAT
sequence update	2002.10.25
Translated Amino Acid sequence	flkcrttityhli*livviislelhylqfinkknkkinnkknkkskrllffvscnk ilisiivinplrrrsapvflttnkqytknkknkkktinynnnnkknnqirnlylii ilnffiffilfyfktlyiyffffvflnlihhnilnqkiyfifkiiilfiylfifk hkhthknthththtkihtqttflihsfayikkliiikLNKY--- ---KRNQTFIDILTDRLSSLENLHLTQSALLSNMLKERGIPESEYSFSEYSEPELISCAF STSPPSSPFSISGGGGSGGIPSQSGIIKKHKKPSGSSGYGDNKNTAERFLECFNRVIKVY KEHYGKKSFELSKFISSLDNDEKKYIGsirifyfilsskiir*slrllnlsi ttstiyviiscnlfpftcnifkykykykykyccnn*kklik*n
Translated Amino Acid sequence (All Frames)	Frame A: ifkvsyhyhissnlvtlnssnyffvgttlftiyqkkknk*kkkiikktfifriv** inididnsnqsfeeekrtcvifnnktiyqkkkkiknnkl***kkqsnqkplfnln nfkffyffyfilfqntlyifflilicffkfnsslnlkpkinlflnlnnyfiylfiyf tqthtqkhthththknshpnhiphsfirlykinnniikiy--- ---KRNQTFIDILTDRLSSLENLHLTQSALLSNMLKERGIPESEYSFSEYSEPELISCAF STSPPSSPFSISGGGGSGGIPSQSGIIKKHKKPSGSSGYGDNKNTAERFLECFNRVIKVY KEHYGKKSFELSKFISSLDNDEKKYIGsirifyfilsskiirslrllnlsi ttstiyviiscnlfpftcnifkykykykykyccnn*kklikn Frame B: flkcrttityhlilivviislelhylqfinkknkkinnkknkkskrllffvscnk ilisiivinplrrrsapvflttnkqytknkknkkktinynnnnkknnqirnlylii ilnffiffilfyfktlyiyffffvflnlihhnilnqkiyfifkiiilfiylfifk hkhthknthththtkihtqttflihsfayikkliiikLNKY--- ---ketkplsislptvyhlktyihnlhcyqickkevypnlnihflnilnlnyhvhf qlhhllhhfqlvvvaavvvfhlkvvlkniknhldhqdmeiikillkdfnalielkfi knimernllnfqnsvvimmkknilvdllesftfdessqvksldnndhcedcncetcpy kqqaeqfmllspvicfpspaikssnntnntnntnntnnntvvtinnknknlnkt Frame C: fsvvplshiissdfk**lflcrnytiynlsikkikkiikkiknnqkdfyfsyrvin kyyr*silggeahlcdfqqinnipkikkiknkkqiiiiiikktiksetfifk fiflfflfyfiskhfiyiffnfnlffifiiikstknkfifkslklfylfiylfln tnthtkthththtqkftpkphssfihslilkn*lnnini--- ---kkpnlyrypyrpfiifrkltfnticivikyvkrkrytriifififtinimcif nfttfftifnwwwrqwwysiskwynktktiwiiriwrkyckifrml*snsl* rtlwkeiftfkihkfr**kkiywliynllllmnplknhiimiivkivivklvhi nnklnnlcyyllfvslhlqlnlqiiqiiqiiqiiqiiillqliikiktykikh
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHO122 (CHO122Q) /CSM/CH/CHO1-A/CHO122Q.Seq.d/ 593 e-168 SSA841 (SSA841Q) /CSM/SS/SSA8-B/SSA841Q.Seq.d/ 583 e-165 SFA609 (SFA609Q) /CSM/SF/SFA6-A/SFA609Q.Seq.d/ 583 e-165 CHS406 (CHS406Q) /CSM/CH/CHS4-A/CHS406Q.Seq.d/ 583 e-165 CHQ704 (CHQ704Q) /CSM/CH/CHQ7-A/CHQ704Q.Seq.d/ 583 e-165 CHQ316 (CHQ316Q) /CSM/CH/CHQ3-A/CHQ316Q.Seq.d/ 583 e-165 CHL743 (CHL743Q) /CSM/CH/CHL7-B/CHL743Q.Seq.d/ 583 e-165 CHL357 (CHL357Q) /CSM/CH/CHL3-C/CHL357Q.Seq.d/ 583 e-165 CHJ872 (CHJ872Q) /CSM/CH/CHJ8-C/CHJ872Q.Seq.d/ 583 e-165 CHH317 (CHH317Q) /CSM/CH/CHH3-A/CHH317Q.Seq.d/ 583 e-165
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL049181\|AL049181.4 Plasmodium falciparum DNA * SEQUENCING IN PROGRESS * from MAL13P4. 38 7e-04 12 DD041861\|DD041861.1 Light-driven energy generation using proteorhodopsin. 36 0.006 8 CR382401\|CR382401.1 Plasmodium falciparum chromosome 6, complete sequence; segment 4/5. 38 0.008 15 AL031745\|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 38 0.017 18 AE014832\|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 32 0.036 17 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 38 0.074 21 AC115599\|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence. 36 0.14 10 AE014842\|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence. 34 0.27 11 CC547916\|CC547916.1 CH240_431P9.T7 CHORI-240 Bos taurus genomic clone CH240_431P9, genomic survey sequence. 34 0.30 3 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.30 16
dna update	2005. 8.10
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3039690 Number of Hits to DB: 1,056,334,821
protein update	2009. 4. 9
PSORT	psg: 0.71 gvh: 0.47 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02 nuc: 0.05 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 32.0 %: cytoplasmic 32.0 %: nuclear 20.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vacuolar 4.0 %: peroxisomal 4.0 %: endoplasmic reticulum >> prediction for CHO122 is cyt
5' end seq. ID	CHO122F
5' end seq.	>CHO122F.Seq ATTTTTAAAGTGTCGTACCACTATCACATATCATCTAATCTAGTGACTTTAAATAGTAGT AATTATTTCTTTGTAGGAACTACACTATTTACAATTTATCAATAAAAAAAATAAAAAAAT AAATAATAAAAAAAATAAAAAATAATCAAAAAGACTTTTATTTTTCGTATCGTGTAATAA ATAAATATTGATATCGATAATAGTAATCAATCCTTTGAGGAGGAGAAGCGCACCTGTGTG ATTTTTAACAACAAATAAACAATATACCAAAAATAAAAAAAATAAAAAATAAAAAACAAT AAATTATAATAATAATAATAAAAAAAACAATCAAATCAGAAACCTTTATTTAATTTAAAT AATTTTAAATTTTTTTATTTTTTTTATTTTATTTTATTTCAAAACACTTTATATATATTT TTTTTAATTTTAATTTGTTTTTTTAAATTTAATTCATCATAATTAAATCTTAAACCAAAA ATAAATTTATTTTTAAATCTTTAAAATAATTATTTTATTTATTTATTTATTTATTTTTAA ACACAAACACACACACAAAAACACACACACACACACACACACAAAAATTCACACCCAAAC CACATTCCTCATTCATTCATTCGCTTATATTAAAAAATTAATAATAATTAAATAATTAAA TAAATATATNNNNNNNNNN
Length of 5' end seq.	679
3' end seq. ID	CHO122Z
3' end seq.	>CHO122Z.Seq NNNNNNNNNNAAAAGAAACCAAACCTTTATCGATATCCTTACCGACCGTTTATCATCTTT AGAAAACTTACATTTAACACAATCTGCATTGTTATCAAATATGTTAAAAGAAAGAGGTAT ACCCGAATCTGAATATTCATTTTCTGAATATTCTGAACCTGAATTAATATCATGTGCATT TTCAACTTCACCACCTTCTTCACCATTTTCAATTAGTGGTGGTGGCGGCAGTGGTGGTAT TCCATCTCAAAGTGGTATAATTAAAAAACATAAAAAACCATCTGGATCATCAGGATATGG AGATAATAAAAATACTGCTGAAAGATTTTTAGAATGCTTTAATAGAGTAATTAAAGTTTA TAAAGAACATTATGGAAAGAAATCTTTTGAACTTTCAAAATTCATAAGTAGTTTAGATAA TGATGAAAAAAAATATATTGGTTGATCTATTAGAATCTTTTACTTTTGATGAATCCTCTC AAGTAAAATCATTAGATAATAATGATCATTGTGAAGATTGTAATTGTGAAACTTGTCCAT ATAAACAACAAGCTGAACAATTTATGTTATTATCTCCTGTAATTTGTTTCCCTTCACCTG CAATTAAATCTTCAAATAATACAAATAATACAAATAATACAAATAATACAAATAATAATA CTGTTGTAACAATTAATAATAAAAATAAAAACTTATAAAATAAAACAT
Length of 3' end seq.	708
Connected seq. ID	CHO122P
Connected seq.	>CHO122P.Seq ATTTTTAAAGTGTCGTACCACTATCACATATCATCTAATCTAGTGACTTTAAATAGTAGT AATTATTTCTTTGTAGGAACTACACTATTTACAATTTATCAATAAAAAAAATAAAAAAAT AAATAATAAAAAAAATAAAAAATAATCAAAAAGACTTTTATTTTTCGTATCGTGTAATAA ATAAATATTGATATCGATAATAGTAATCAATCCTTTGAGGAGGAGAAGCGCACCTGTGTG ATTTTTAACAACAAATAAACAATATACCAAAAATAAAAAAAATAAAAAATAAAAAACAAT AAATTATAATAATAATAATAAAAAAAACAATCAAATCAGAAACCTTTATTTAATTTAAAT AATTTTAAATTTTTTTATTTTTTTTATTTTATTTTATTTCAAAACACTTTATATATATTT TTTTTAATTTTAATTTGTTTTTTTAAATTTAATTCATCATAATTAAATCTTAAACCAAAA ATAAATTTATTTTTAAATCTTTAAAATAATTATTTTATTTATTTATTTATTTATTTTTAA ACACAAACACACACACAAAAACACACACACACACACACACACAAAAATTCACACCCAAAC CACATTCCTCATTCATTCATTCGCTTATATTAAAAAATTAATAATAATTAAATAATTAAA TAAATATAT----------AAAAGAAACCAAACCTTTATCGATATCCTTACCGACCGTTT ATCATCTTTAGAAAACTTACATTTAACACAATCTGCATTGTTATCAAATATGTTAAAAGA AAGAGGTATACCCGAATCTGAATATTCATTTTCTGAATATTCTGAACCTGAATTAATATC ATGTGCATTTTCAACTTCACCACCTTCTTCACCATTTTCAATTAGTGGTGGTGGCGGCAG TGGTGGTATTCCATCTCAAAGTGGTATAATTAAAAAACATAAAAAACCATCTGGATCATC AGGATATGGAGATAATAAAAATACTGCTGAAAGATTTTTAGAATGCTTTAATAGAGTAAT TAAAGTTTATAAAGAACATTATGGAAAGAAATCTTTTGAACTTTCAAAATTCATAAGTAG TTTAGATAATGATGAAAAAAAATATATTGGTTGATCTATTAGAATCTTTTACTTTTGATG AATCCTCTCAAGTAAAATCATTAGATAATAATGATCATTGTGAAGATTGTAATTGTGAAA CTTGTCCATATAAACAACAAGCTGAACAATTTATGTTATTATCTCCTGTAATTTGTTTCC CTTCACCTGCAATTAAATCTTCAAATAATACAAATAATACAAATAATACAAATAATACAA ATAATAATACTGTTGTAACAATTAATAATAAAAATAAAAACTTATAAAATAAAACAT
Length of connected seq.	1367
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas