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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHO116
Library CH
(Link to library)
Clone ID CHO116
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID CHO116P
(Link to Original site)
Representative DNA sequence 
>CHO116 (CHO116Q) /CSM/CH/CHO1-A/CHO116Q.Seq.d/
ATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCACA
TTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTTA
ATTTTAATAAAAAAAAAAXXXXXXXXXXTCTTGATCATCTTAAAAATGGGTCGTTCCATA
TCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTAT
GTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCA
AACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATT
GTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGA
GGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGA
AGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATAC
TGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTNTGAGTTATCTTCTGTATT
TTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGG
TTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGC
TTTNTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTANATTGGTGA
TGGTGTTAGATTCATTCCANACAGTGCCACTCGTAT
sequence update 2002.10.25
Translated Amino Acid sequence 
lkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---LDHLKNGSFHIVHLRLTKLIHHSFFQPLSLCSCHQVVHQMLSSSLVKVLFKPLSYSW
LSFPFQLCWSLNHCS*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiks
fipsslfwvlfqilplifvyglfhwltxsyllyfgnvfslvksnvvihswlslvlvlg*v
plllyfylwnpfllxctlldfig*nskinsxlvmvldsfxtvplv
Translated Amino Acid sequence (All Frames) 
Frame A:
i*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---s*ss*kwvvpyrsfevdkvdppfilptiiamflspggtpdvvffsgqgavqtallfl
alisipvmlvikplfmkrfhfqeverkklghheeehddealytghhgeefemgevfvhqv
ihtiefvlgavsntasylrlwalslahxelssvfweriligqvergnpflafvgfgawlg
asvavlllmeslsaxlhalrlhwvefqnkfxigdgvrfipxsatr

Frame B:
fkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---LDHLKNGSFHIVHLRLTKLIHHSFFQPLSLCSCHQVVHQMLSSSLVKVLFKPLSYSW
LSFPFQLCWSLNHCS*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiks
fipsslfwvlfqilplifvyglfhwltxsyllyfgnvfslvksnvvihswlslvlvlg*v
plllyfylwnpfllxctlldfig*nskinsxlvmvldsfxtvplv

Frame C:
lkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---liilkmgrsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrslilg
shfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcsssh
syhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrc
lccctftygipfcfxars*tslgripk*ilxw*wc*ihsxqchsy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHO116 (CHO116Q) /CSM/CH/CHO1-A/CHO116Q.Seq.d/                       1300   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1285   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1285   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1285   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                       1283   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1283   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1283   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1283   0.0
CHP520 (CHP520Q) /CSM/CH/CHP5-A/CHP520Q.Seq.d/                       1281   0.0
AHB588 (AHB588Q) /CSM/AH/AHB5-D/AHB588Q.Seq.d/                       1281   0.0
own update 2002.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1273   0.0    2
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   1e-13  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   2e-11  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   7e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   3e-09  6
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence.    72   2e-08  1
CO099107|CO099107.1 GR__Ea23M21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea23M21 5', mRNA sequence.    72   2e-08  1
CO071051|CO071051.1 GR__Ea28H19.r GR__Ea Gossypium raimondii cDNA clone GR__Ea28H19 3', mRNA sequence.    72   2e-08  1
CO070907|CO070907.1 GR__Ea28D10.f GR__Ea Gossypium raimondii cDNA clone GR__Ea28D10 5', mRNA sequence.    72   2e-08  1
CO114093|CO114093.1 GR__Eb015A17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 5', mRNA sequence.    72   2e-08  1
dna update 2005. 8.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   405   e-112
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   405   e-112
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   174   4e-42
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   170   4e-41
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   170   5e-41
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   167   3e-40
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   167   3e-40
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   167   5e-40
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   166   6e-40
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   164   2e-39
protein update 2009. 4. 9
PSORT 

 psg: 0.85  gvh: 0.56  alm: 0.47  top: 0.73  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for CHO116 is cyt
5' end seq. ID CHO116F
5' end seq. 
>CHO116F.Seq
ATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCACA
TTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTTA
ATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 148
3' end seq. ID CHO116Z
3' end seq. 
>CHO116Z.Seq
NNNNNNNNNNTCTTGATCATCTTAAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGA
CAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGG
TACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTT
GGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCA
CTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGC
TCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGT
CATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTT
ATGGGCTCTTTCATTGGCTCACTNTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCAT
TGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGG
TGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTNTTGCACGCTCTTAG
ACTTCATTGGGTAGAATTCCAAAATAAATTCTANATTGGTGATGGTGTTAGATTCATTCC
ANACAGTGCCACTCGTAT
Length of 3' end seq. 678
Connected seq. ID CHO116P
Connected seq. 
>CHO116P.Seq
ATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACACAAAAAAATTCATATCACA
TTATTGTTTTTCATTAATTTATAAACAATAATATATATATAATAAACACTCTATCATTTA
ATTTTAATAAAAAAAAAA----------TCTTGATCATCTTAAAAATGGGTCGTTCCATA
TCGTTCATTTGAGGTTGACAAAGTTGATCCACCATTCATTCTTCCAACCATTATCGCTAT
GTTCTTGTCACCAGGTGGTACACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCA
AACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATT
GTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGA
GGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGA
AGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATAC
TGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTNTGAGTTATCTTCTGTATT
TTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGG
TTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGC
TTTNTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTANATTGGTGA
TGGTGTTAGATTCATTCCANACAGTGCCACTCGTAT
Length of connected seq. 806
Full length Seq ID -
Full length Seq. -
Length of full length seq. -