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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN886
Library CH
(Link to library)
Clone ID CHN886
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15871-1|Contig-U16255-1
Original site URL
Representative seq. ID CHN886P
(Link to Original site)
Representative DNA sequence 
>CHN886 (CHN886Q) /CSM/CH/CHN8-D/CHN886Q.Seq.d/
ATGTCAACATCAATGTCTGGATCAAAATCAAGTATTGCATCATTCGGTAGTGGAACAAGT
ATGAGTTCAAATTCAATTGCATGTGGTGGTGGTTGTGGAGGAAGTGGTGGTATTCTTGGT
TCAGGTTTAGGTTTAGGTCTAGGACTAGGTTTAGATTTAACTGGTGGTTCTAGATCTAGA
GGTTCTTGTGGTGGTAATCGTGGTAATGGTAATGGTAATGGAGGTATGGGTGGAGGAAAT
GGTTCATGTTGTGGAGGTCCATGTTGTGGTATTTAAAATATTTAAAAAAACTATAATATA
TTACCAAATTACTATAAATATAAAACAATTTTATTTAAAATAAAATTGGTGGATTACCGA
ATTATAAAAAAAAACAAATAAATAAAAAACTATTTTTTCNNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAANCCCCCCNAAAAAAAAAXXXXXXXXXXGCGGACGTCCAAAT
AAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCA
AAAGGTTACGAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCA
AAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACT
CCACAAAAGAAGACTGAT
sequence update 2002.10.25
Translated Amino Acid sequence 
vninvwikikyciir*wnkyefkfncmwwwlwrkwwyswfrfrfrsrtrfrfnwwf*i*r
flww*sw*w*w*wrygwrkwfmlwrsmlwylkylkkl*yitkll*i*nnfi*NKIGGLPN
YKKKQINKKLFFXKKKKKKKKKKKKXPPXKK---

---GRPNKIKVICVPSPKGTCKTVQCPKGYECKLYADGPTCVKIEKPKCLTCKDMHCESN
GLLCVLTPQKKTD
Translated Amino Acid sequence (All Frames) 
Frame A:
mstsmsgskssiasfgsgtsmssnsiacgggcggsggilgsglglglglgldltggsrsr
gscggnrgngngnggmgggngsccggpccgi*ni*knynilpnyykyktilfkiklvdyr
iikknk*iknyffxkkkkkkkkkkkkxppkkk---

---advqirlkssvfhhqkvlarlfnvqkvtnansmlmvqhv*rlknqnvslvkicivsq
mdysvs*lhkrrl

Frame B:
cqhqcldqnqvlhhsvveqv*vqiqlhvvvvveevvvflvqv*v*v*d*v*i*lvvldle
vlvvvivvmvmvmevwveemvhvvevhvvvfkifkktiiyyqitinikqfylk*nwwite
l*kktnk*ktifsxkkkkkkkkkkkkxpxkk---

---rtsk*d*shlcsitkrylqdcsmskrlrmqtlc*wsnmckd*ktkmshl*ryal*vk
witlcldstked*

Frame C:
vninvwikikyciir*wnkyefkfncmwwwlwrkwwyswfrfrfrsrtrfrfnwwf*i*r
flww*sw*w*w*wrygwrkwfmlwrsmlwylkylkkl*yitkll*i*nnfi*NKIGGLPN
YKKKQINKKLFFXKKKKKKKKKKKKXPPXKK---

---GRPNKIKVICVPSPKGTCKTVQCPKGYECKLYADGPTCVKIEKPKCLTCKDMHCESN
GLLCVLTPQKKTD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI656 (SSI656Q) /CSM/SS/SSI6-C/SSI656Q.Seq.d/                        682   0.0
SSG633 (SSG633Q) /CSM/SS/SSG6-B/SSG633Q.Seq.d/                        682   0.0
CHN886 (CHN886Q) /CSM/CH/CHN8-D/CHN886Q.Seq.d/                        682   0.0
SSJ167 (SSJ167Q) /CSM/SS/SSJ1-C/SSJ167Q.Seq.d/                        452   e-126
SSE793 (SSE793Q) /CSM/SS/SSE7-D/SSE793Q.Seq.d/                        452   e-126
SSC520 (SSC520Q) /CSM/SS/SSC5-A/SSC520Q.Seq.d/                        452   e-126
SLE235 (SLE235Q) /CSM/SL/SLE2-B/SLE235Q.Seq.d/                        446   e-124
SSL214 (SSL214Q) /CSM/SS/SSL2-A/SSL214Q.Seq.d/                        436   e-121
CFH576 (CFH576Q) /CSM/CF/CFH5-D/CFH576Q.Seq.d/                        430   e-119
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        412   e-114
own update 2002.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.   412   e-111  1
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds.   412   e-111  1
X16827|X16827.1 Dictyostelium discoideum 2C mRNA.                  78   4e-15  3
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   1e-05  14
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   4e-05  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   5e-05  14
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.    42   7e-04  7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 ma...    36   9e-04  11
AL390201|AL390201.13 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP13-265C1.    38   0.004  6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   0.005  14
dna update 2005. 8. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   157   3e-37
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    58   2e-07
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    58   2e-07
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    50   6e-05
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        49   1e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    49   1e-04
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    45   0.002
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    40   0.061
CR940353_619(CR940353|pid:none) Theileria annulata strain Ankara...    39   0.13
AY142138_1(AY142138|pid:none) Giardia intestinalis isolate WB cl...    39   0.14
protein update 2009. 4. 9
PSORT 

 psg: 0.49  gvh: 0.35  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.08
 nuc: 1.17  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHN886 is nuc
5' end seq. ID CHN886F
5' end seq. 
>CHN886F.Seq
ATGTCAACATCAATGTCTGGATCAAAATCAAGTATTGCATCATTCGGTAGTGGAACAAGT
ATGAGTTCAAATTCAATTGCATGTGGTGGTGGTTGTGGAGGAAGTGGTGGTATTCTTGGT
TCAGGTTTAGGTTTAGGTCTAGGACTAGGTTTAGATTTAACTGGTGGTTCTAGATCTAGA
GGTTCTTGTGGTGGTAATCGTGGTAATGGTAATGGTAATGGAGGTATGGGTGGAGGAAAT
GGTTCATGTTGTGGAGGTCCATGTTGTGGTATTTAAAATATTTAAAAAAACTATAATATA
TTACCAAATTACTATAAATATAAAACAATTTTATTTAAAATAAAATTGGTGGATTACCGA
ATTATAAAAAAAAACAAATAAATAAAAAACTATTTTTTCNNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAANCCCCCCNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 466
3' end seq. ID CHN886Z
3' end seq. 
>CHN886Z.Seq
NNNNNNNNNNGCGGACGTCCAAATAAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGT
ACTTGCAAGACTGTTCAATGTCCAAAAGGTTACGAATGCAAACTCTATGCTGATGGTCCA
ACATGTGTAAAGATTGAAAAACCAAAATGTCTCACTTGTAAAGATATGCATTGTGAGTCA
AATGGATTACTCTGTGTCTTGACTCCACAAAAGAAGACTGAT
Length of 3' end seq. 222
Connected seq. ID CHN886P
Connected seq. 
>CHN886P.Seq
ATGTCAACATCAATGTCTGGATCAAAATCAAGTATTGCATCATTCGGTAGTGGAACAAGT
ATGAGTTCAAATTCAATTGCATGTGGTGGTGGTTGTGGAGGAAGTGGTGGTATTCTTGGT
TCAGGTTTAGGTTTAGGTCTAGGACTAGGTTTAGATTTAACTGGTGGTTCTAGATCTAGA
GGTTCTTGTGGTGGTAATCGTGGTAATGGTAATGGTAATGGAGGTATGGGTGGAGGAAAT
GGTTCATGTTGTGGAGGTCCATGTTGTGGTATTTAAAATATTTAAAAAAACTATAATATA
TTACCAAATTACTATAAATATAAAACAATTTTATTTAAAATAAAATTGGTGGATTACCGA
ATTATAAAAAAAAACAAATAAATAAAAAACTATTTTTTCNNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAANCCCCCCNAAAAAAAAA----------GCGGACGTCCAAAT
AAGATTAAAGTCATCTGTGTTCCATCACCAAAAGGTACTTGCAAGACTGTTCAATGTCCA
AAAGGTTACGAATGCAAACTCTATGCTGATGGTCCAACATGTGTAAAGATTGAAAAACCA
AAATGTCTCACTTGTAAAGATATGCATTGTGAGTCAAATGGATTACTCTGTGTCTTGACT
CCACAAAAGAAGACTGAT
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -