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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN840
Library CH
(Link to library)
Clone ID CHN840
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15685-1
Original site URL
Representative seq. ID CHN840P
(Link to Original site)
Representative DNA sequence 
>CHN840 (CHN840Q) /CSM/CH/CHN8-B/CHN840Q.Seq.d/
TGGCCTACTGGGAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACA
CAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATA
ATAAACACTCTATCATTTAATTTTAATAAAAAAAAAAXXXXXXXXXXCTGGTCAAGGTGC
TGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAA
ACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCA
CGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAAT
GGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTC
AAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTC
TGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTT
CGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCT
TTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATAT
TGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTATTCTT
sequence update 2002.10.25
Translated Amino Acid sequence 
wptgknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATR
IL
Translated Amino Acid sequence (All Frames) 
Frame A:
wptgknylkknreysyiyntqknsyhiivfh*FINNNIYIINTLSFNFNKKK---

---lvkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlv
itvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksn
vvihswlslvlvlg*vplllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvpl
vf

Frame B:
gllgkti*kkieniviyithkkihitllffinl*tiiyi**tlyhlilikkk---

---wsrccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhws
sr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrt
w*silgfrwfwclvrclccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchs
ys

Frame C:
ayweklfkkk*ri*lyi*htkkfishycfsliykq*yiynkhsii*f**kk---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATR
IL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1068   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                       1068   0.0
SHJ790 (SHJ790Q) /CSM/SH/SHJ7-D/SHJ790Q.Seq.d/                       1068   0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/                       1068   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1068   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1068   0.0
CHN840 (CHN840Q) /CSM/CH/CHN8-B/CHN840Q.Seq.d/                       1068   0.0
CHM455 (CHM455Q) /CSM/CH/CHM4-C/CHM455Q.Seq.d/                       1068   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1068   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1068   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1068   0.0    1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   9e-14  2
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   2e-11  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   6e-11  1
AC137668|AC137668.18 Medicago truncatula clone mth2-5f8, complete sequence.    52   2e-09  6
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   3e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   5e-09  3
CO124018|CO124018.1 GR__Eb06J21.r GR__Eb Gossypium raimondii cDNA clone GR__Eb06J21 3', mRNA sequence.    72   1e-08  1
CO114922|CO114922.1 GR__Eb016F15.r GR__Eb Gossypium raimondii cDNA clone GR__Eb016F15 3', mRNA sequence.    72   1e-08  1
CO114094|CO114094.1 GR__Eb015A17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 3', mRNA sequence.    72   1e-08  1
dna update 2005. 8. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   361   1e-98
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   361   1e-98
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   201   1e-50
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   196   6e-49
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   196   6e-49
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   196   6e-49
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   196   7e-49
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   195   9e-49
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   189   7e-47
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   189   9e-47
protein update 2009. 4. 9
PSORT 

 psg: 0.85  gvh: 0.62  alm: 0.18  top: 0.50  tms: 0.20  mit: 0.32  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 28.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHN840 is mit
5' end seq. ID CHN840F
5' end seq. 
>CHN840F.Seq
TGGCCTACTGGGAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACA
CAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATA
ATAAACACTCTATCATTTAATTTTAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 167
3' end seq. ID CHN840Z
3' end seq. 
>CHN840Z.Seq
NNNNNNNNNNCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCC
ATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTC
GAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGT
CATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATC
GAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCA
TTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAA
CGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCT
GTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTA
GAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACT
CGTATTCTT
Length of 3' end seq. 549
Connected seq. ID CHN840P
Connected seq. 
>CHN840P.Seq
TGGCCTACTGGGAAAAACTATTTAAAAAAAAATAGAGAATATAGTTATATATATAACACA
CAAAAAAATTCATATCACATTATTGTTTTTCATTAATTTATAAACAATAATATATATATA
ATAAACACTCTATCATTTAATTTTAATAAAAAAAAAA----------CTGGTCAAGGTGC
TGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAA
ACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCA
CGAAGAGGAACATGATGATGAAGCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAAT
GGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTC
AAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTC
TGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTT
CGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCT
TTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTAGAATTCCAAAATAAATTCTATAT
TGGTGATGGTGTTAGATTCATTCCATACAGTGCCACTCGTATTCTT
Length of connected seq. 696
Full length Seq ID -
Full length Seq. -
Length of full length seq. -