NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN839
Library CH
(Link to library)
Clone ID CHN839
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11689-1
Original site URL
Representative seq. ID CHN839P
(Link to Original site)
Representative DNA sequence 
>CHN839 (CHN839Q) /CSM/CH/CHN8-B/CHN839Q.Seq.d/
AACAATTTTAATAATTCATATTTAAATAATGAAAGTAAAAGCACCAATATTACTTTTATT
TGTATTTTTAATAAATTTTTGTTTTTCAATAAAACAAACCCAACAACAAAATTTTGATAT
AACTATAGATAATAATAATTATAATAATAATAATAATAATAATAAAAATGAAATTATAAA
TAATAATAATAAGAATAATAATAATTTAAATGATGAATATTTCGAAAAGTTAGGATATGA
TACAAATGGTACAAAATGCGATATTTGTAAATTTGGAATTAATCAAGTTCAAAAGATGAT
TGCTTCAAAACAAGGAATTGAAGATATTTCAAAATATGCTATTGATTTATGTACATATTT
ACATATTGAAAAAGCTGAAGTTTGTAATGGGTTAATACCATTATTTGCAAATATGACATA
TAATGTATTATCATATCCAACAGTAACTGGTGAATATGTTTGTGGATTTGTTGGATTTTG
TCCATATGTTCCAAGAAATTCAAGTAATATTATTAATTTCCCAAAACCAAAACCACCTCA
TGTTCCACCAGTTGCACCATCACCAAATTCACCAACAATGAAAATTTTACATATCTCTGA
TATTCATGTAGATCCAGTTTATGAGAGTGGTATGAATGCAGATTGTGGTGAACCATTATG
TTGTCGTGCACCAXXXXXXXXXXTATACCAGACTGTATCGATAGTTGGTCTGAGCAATTA
CTTCAAATAGTCAATCGTTATGAAGATACTATTTTAGCCTCATTCTATGGTCATACTCAT
AGAGATGAATTTTCAGTTTATTACACTCAATCCGATGAAAATGATCCATCATCACCAATG
AGAGCTAGTAATGTCATTTATACAACACCAAGTGTTACAACCTATCAACATCAAAATCCA
TCATTCCGTATCTTTACAGTGGATTCAAACACTGGTTATCTTATGGAATCAAGTACCTAT
CATACAGATCTAAGTCAGGCCAATCTCAATGGTAAACCAACTTGGTTATTGGAATATAAT
ACAACCAACACTTATAACATTCCAAATTTAACTCCAATCTCTATGGATTTAGCAATTCAA
AATATTAACTCTAGCAATTCAATGTTGGAAGATTATCATGTTCATTATTATTCAGCTTCA
CCATATCCAGAATCAAAACCTTGCACCTCTATCTCTTGCAAATTAGATTACATTTGTAAA
ATGAAATCTGCAGCTTACTTAAAATATTATGAATGTATTCATCATGAAGTTAATATTATC
TTTTAAATGAATCTGATGAGNATTCAATTAATCTCATAAAAAATTAAATATCCTTTTAGA
TTTAATATATTTAAATAATAAGTTTAAAATCTGTAAAAAAAAATAAATAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
tiliihi*IMKVKAPILLLFVFLINFCFSIKQTQQQNFDITIDNNNYNNNNNNNKNEIIN
NNNKNNNNLNDEYFEKLGYDTNGTKCDICKFGINQVQKMIASKQGIEDISKYAIDLCTYL
HIEKAEVCNGLIPLFANMTYNVLSYPTVTGEYVCGFVGFCPYVPRNSSNIINFPKPKPPH
VPPVAPSPNSPTMKILHISDIHVDPVYESGMNADCGEPLCCRAP---

---IPDCIDSWSEQLLQIVNRYEDTILASFYGHTHRDEFSVYYTQSDENDPSSPMRASNV
IYTTPSVTTYQHQNPSFRIFTVDSNTGYLMESSTYHTDLSQANLNGKPTWLLEYNTTNTY
NIPNLTPISMDLAIQNINSSNSMLEDYHVHYYSASPYPESKPCTSISCKLDYICKMKSAA
YLKYYECIHHEVNIIF*mnlmxiqlis*kikypfrfnifk**v*nl*kkink
Translated Amino Acid sequence (All Frames) 
Frame A:
nnfnnsylnneskstnitficifnkflffnktnpttkf*ynyr***l********k*nyk
****e***fk**ifrkvri*ykwykmryl*iwn*ssskddcfktrn*ryfkicy*fmyif
ty*ks*sl*wvntiickydi*ciiisnsnw*iclwicwilsicskkfk*yy*fpktktts
cstsctitkftnnenftyl*yscrssl*ewyecrlw*timlsct---

---ytrlyr*lv*aitsnsqsl*ryyfslilwsys*r*ifsllhsir*k*siitnes**c
hlyntkcynlstsksiipylysgfkhwlsygikylsyrsksgqsqw*tnlvigi*ynqhl
*hskfnsnlygfsnsky*l*qfnvgrlscsllfsftisriktlhlyllqirlhl*neics
llkil*myss*s*yyllnesdexsinlikn*isf*i*yi*iislksvkknk*

Frame B:
tiliihi*IMKVKAPILLLFVFLINFCFSIKQTQQQNFDITIDNNNYNNNNNNNKNEIIN
NNNKNNNNLNDEYFEKLGYDTNGTKCDICKFGINQVQKMIASKQGIEDISKYAIDLCTYL
HIEKAEVCNGLIPLFANMTYNVLSYPTVTGEYVCGFVGFCPYVPRNSSNIINFPKPKPPH
VPPVAPSPNSPTMKILHISDIHVDPVYESGMNADCGEPLCCRAP---

---IPDCIDSWSEQLLQIVNRYEDTILASFYGHTHRDEFSVYYTQSDENDPSSPMRASNV
IYTTPSVTTYQHQNPSFRIFTVDSNTGYLMESSTYHTDLSQANLNGKPTWLLEYNTTNTY
NIPNLTPISMDLAIQNINSSNSMLEDYHVHYYSASPYPESKPCTSISCKLDYICKMKSAA
YLKYYECIHHEVNIIF*mnlmxiqlis*kikypfrfnifk**v*nl*kkink

Frame C:
qf**fifk**k*khqyyfylyf**ifvfq*nkpnnkili*l*iiiiiiiiiiiikmkl*i
iiiriiii*mmnisks*dmiqmvqnaifvnlelikfkr*llqnkelkifqnmlliyvhiy
ilkklkfvmg*yhylqi*himyyhiqq*lvnmfvdlldfvhmfqeiqvillisqnqnhlm
fhqlhhhqihqq*kfyislifm*iqfmrvv*mqivvnhyvvvh---

---yqtvsivglsnyfk*sivmkilf*phsmviliemnfqfitlnpmkmihhhq*elvms
fiqhqvlqpinikihhsvslqwiqtlvilwnqvpiiqi*vrpismvnqlgywniiqptli
tfqi*lqslwi*qfkiltlaiqcwkiimfiiiqlhhiqnqnlaplslan*itfvk*nlql
t*nimnvfimklilsfk*i**xfn*shkklnilldliylnnkfkickkk*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN839 (CHN839Q) /CSM/CH/CHN8-B/CHN839Q.Seq.d/                       2200   0.0
CHE303 (CHE303Q) /CSM/CH/CHE3-A/CHE303Q.Seq.d/                       1134   0.0
SSA569 (SSA569Q) /CSM/SS/SSA5-C/SSA569Q.Seq.d/                         44   0.006
SSE841 (SSE841Q) /CSM/SS/SSE8-B/SSE841Q.Seq.d/                         40   0.088
SSC374 (SSC374Q) /CSM/SS/SSC3-D/SSC374Q.Seq.d/                         40   0.088
AHC113 (AHC113Q) /CSM/AH/AHC1-A/AHC113Q.Seq.d/                         40   0.088
CHG874 (CHG874Q) /CSM/CH/CHG8-D/CHG874Q.Seq.d/                         38   0.35
VHQ307 (VHQ307Q) /CSM/VH/VHQ3-A/VHQ307Q.Seq.d/                         38   0.35
VHQ236 (VHQ236Q) /CSM/VH/VHQ2-B/VHQ236Q.Seq.d/                         38   0.35
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    40   1e-11  31
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38   2e-08  22
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    34   3e-08  28
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   2e-07  26
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   3e-07  29
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    32   3e-07  21
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    36   6e-07  16
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         34   1e-06  20
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   2e-06  17
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   3e-06  22
dna update 2005. 8. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C16) RecName: Full=Sphingomyelin phosphodiesterase B;       ...   402   e-110
AE013599_4075(AE013599|pid:none) Drosophila melanogaster chromos...   114   8e-24
AE013599_4074(AE013599|pid:none) Drosophila melanogaster chromos...   114   8e-24
AY261860_1(AY261860|pid:none) Ciona intestinalis sphingomyelin p...   110   9e-23
X59960_1(X59960|pid:none) H.sapiens mRNA for sphingomyelinase.        110   1e-22
(P17405) RecName: Full=Sphingomyelin phosphodiesterase;         ...   110   1e-22
A39825(S27009;S36357;A39825;JX0276;S06957;I55567;A42801;) sphing...   110   1e-22
X63600_1(X63600|pid:none) H.sapiens genes for acid sphingomyelin...   110   1e-22
AK292388_1(AK292388|pid:none) Homo sapiens cDNA FLJ77600 complet...   110   1e-22
M81780_2(M81780|pid:none) Homo sapiens acid sphingomyelinase (SM...   110   1e-22
protein update 2009. 4. 9
PSORT 

 psg: 1.01  gvh: 0.80  alm: 0.43  top: 0.27  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for CHN839 is exc
5' end seq. ID CHN839F
5' end seq. 
>CHN839F.Seq
AACAATTTTAATAATTCATATTTAAATAATGAAAGTAAAAGCACCAATATTACTTTTATT
TGTATTTTTAATAAATTTTTGTTTTTCAATAAAACAAACCCAACAACAAAATTTTGATAT
AACTATAGATAATAATAATTATAATAATAATAATAATAATAATAAAAATGAAATTATAAA
TAATAATAATAAGAATAATAATAATTTAAATGATGAATATTTCGAAAAGTTAGGATATGA
TACAAATGGTACAAAATGCGATATTTGTAAATTTGGAATTAATCAAGTTCAAAAGATGAT
TGCTTCAAAACAAGGAATTGAAGATATTTCAAAATATGCTATTGATTTATGTACATATTT
ACATATTGAAAAAGCTGAAGTTTGTAATGGGTTAATACCATTATTTGCAAATATGACATA
TAATGTATTATCATATCCAACAGTAACTGGTGAATATGTTTGTGGATTTGTTGGATTTTG
TCCATATGTTCCAAGAAATTCAAGTAATATTATTAATTTCCCAAAACCAAAACCACCTCA
TGTTCCACCAGTTGCACCATCACCAAATTCACCAACAATGAAAATTTTACATATCTCTGA
TATTCATGTAGATCCAGTTTATGAGAGTGGTATGAATGCAGATTGTGGTGAACCATTATG
TTGTCGTGCACCANNNNNNNNNN
Length of 5' end seq. 683
3' end seq. ID CHN839Z
3' end seq. 
>CHN839Z.Seq
NNNNNNNNNNTATACCAGACTGTATCGATAGTTGGTCTGAGCAATTACTTCAAATAGTCA
ATCGTTATGAAGATACTATTTTAGCCTCATTCTATGGTCATACTCATAGAGATGAATTTT
CAGTTTATTACACTCAATCCGATGAAAATGATCCATCATCACCAATGAGAGCTAGTAATG
TCATTTATACAACACCAAGTGTTACAACCTATCAACATCAAAATCCATCATTCCGTATCT
TTACAGTGGATTCAAACACTGGTTATCTTATGGAATCAAGTACCTATCATACAGATCTAA
GTCAGGCCAATCTCAATGGTAAACCAACTTGGTTATTGGAATATAATACAACCAACACTT
ATAACATTCCAAATTTAACTCCAATCTCTATGGATTTAGCAATTCAAAATATTAACTCTA
GCAATTCAATGTTGGAAGATTATCATGTTCATTATTATTCAGCTTCACCATATCCAGAAT
CAAAACCTTGCACCTCTATCTCTTGCAAATTAGATTACATTTGTAAAATGAAATCTGCAG
CTTACTTAAAATATTATGAATGTATTCATCATGAAGTTAATATTATCTTTTAAATGAATC
TGATGAGNATTCAATTAATCTCATAAAAAATTAAATATCCTTTTAGATTTAATATATTTA
AATAATAAGTTTAAAATCTGTAAAAAAAAATAAATAAAA
Length of 3' end seq. 699
Connected seq. ID CHN839P
Connected seq. 
>CHN839P.Seq
AACAATTTTAATAATTCATATTTAAATAATGAAAGTAAAAGCACCAATATTACTTTTATT
TGTATTTTTAATAAATTTTTGTTTTTCAATAAAACAAACCCAACAACAAAATTTTGATAT
AACTATAGATAATAATAATTATAATAATAATAATAATAATAATAAAAATGAAATTATAAA
TAATAATAATAAGAATAATAATAATTTAAATGATGAATATTTCGAAAAGTTAGGATATGA
TACAAATGGTACAAAATGCGATATTTGTAAATTTGGAATTAATCAAGTTCAAAAGATGAT
TGCTTCAAAACAAGGAATTGAAGATATTTCAAAATATGCTATTGATTTATGTACATATTT
ACATATTGAAAAAGCTGAAGTTTGTAATGGGTTAATACCATTATTTGCAAATATGACATA
TAATGTATTATCATATCCAACAGTAACTGGTGAATATGTTTGTGGATTTGTTGGATTTTG
TCCATATGTTCCAAGAAATTCAAGTAATATTATTAATTTCCCAAAACCAAAACCACCTCA
TGTTCCACCAGTTGCACCATCACCAAATTCACCAACAATGAAAATTTTACATATCTCTGA
TATTCATGTAGATCCAGTTTATGAGAGTGGTATGAATGCAGATTGTGGTGAACCATTATG
TTGTCGTGCACCA----------TATACCAGACTGTATCGATAGTTGGTCTGAGCAATTA
CTTCAAATAGTCAATCGTTATGAAGATACTATTTTAGCCTCATTCTATGGTCATACTCAT
AGAGATGAATTTTCAGTTTATTACACTCAATCCGATGAAAATGATCCATCATCACCAATG
AGAGCTAGTAATGTCATTTATACAACACCAAGTGTTACAACCTATCAACATCAAAATCCA
TCATTCCGTATCTTTACAGTGGATTCAAACACTGGTTATCTTATGGAATCAAGTACCTAT
CATACAGATCTAAGTCAGGCCAATCTCAATGGTAAACCAACTTGGTTATTGGAATATAAT
ACAACCAACACTTATAACATTCCAAATTTAACTCCAATCTCTATGGATTTAGCAATTCAA
AATATTAACTCTAGCAATTCAATGTTGGAAGATTATCATGTTCATTATTATTCAGCTTCA
CCATATCCAGAATCAAAACCTTGCACCTCTATCTCTTGCAAATTAGATTACATTTGTAAA
ATGAAATCTGCAGCTTACTTAAAATATTATGAATGTATTCATCATGAAGTTAATATTATC
TTTTAAATGAATCTGATGAGNATTCAATTAATCTCATAAAAAATTAAATATCCTTTTAGA
TTTAATATATTTAAATAATAAGTTTAAAATCTGTAAAAAAAAATAAATAAAA
Length of connected seq. 1362
Full length Seq ID -
Full length Seq. -
Length of full length seq. -