CHN835
Library CH
(Link to library)
Clone ID CHN835
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11861-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHN835 (CHN835Q) /CSM/CH/CHN8-B/CHN835Q.Seq.d/
XXXXXXXXXXCAAATAATGAATCATCAANTAATGAATCAAATAATGATTCATCGAATAAC
GAAATCCAAGTAGCCAAGGTTCAANCAATGAATCATCCAAATAATGAATCATCGAATAAT
GAATCAAGTAGCCAAAGTTCAAATAATGGATCATCAAATAATGAATCAAGTAACCAAGGT
TCAAACAATGAATCAAGTAGCCATGGCTCAAACAATGAATCAAGCAGCAAAGGTTCAAAC
AATGAATCAAGTAGCCATGGTTCAAACAATGAATCAAGTAGCCAAGGTTCAAATAATGAA
TCATCCAACAATGAATCAAGCAACCAAAATTCAAACAATGAATCATCAAATAATGAATCT
AGCAGCAAGGGTTCAAATAATGAATCGTCAAATAATGAATCAAGCAGCCAGGGTTCAAAT
AATGAATCATCAAATAACGAATCTAACAACCAAAATTCAAACAATGAATCATCACATAAA
GAAGAAAGTGAATCAAACAGTCATCAAAGTTCAGAAACTGAATCCAAAGATCAAGTTTCA
AATAGTGGATCAATGAATCAAAGTAGTGAGTCAAGTGAATCATCGTCTTTATCAGAACAA
AGCTCTGCTTTTGAATCTTCGTCATCATCGAGTGGTAATTCTCAATCAAAATCAAGTGAA
AATGACGATTCATCTTCTTCCTCAGGTAGTAAAAATTCAAACTCT
sequence update 2002. 9.10
Translated Amino Acid sequence
---NNESSXNESNNDSSNNEIQVAKVQXMNHPNNESSNNESSSQSSNNGSSNNESSNQGS
NNESSSHGSNNESSSKGSNNESSSHGSNNESSSQGSNNESSNNESSNQNSNNESSNNESS
SKGSNNESSNNESSSQGSNNESSNNESNNQNSNNESSHKEESESNSHQSSETESKDQVSN
SGSMNQSSESSESSSLSEQSSAFESSSSSSGNSQSKSSENDDSSSSSGSKNSNS


Translated Amino Acid sequence (All Frames)
Frame A:
---k**iix**ik**fie*rnpssqgsxnessk**iie**ik*pkfk*wiik**ik*prf
kq*ik*pwlkq*ikqqrfkq*ik*pwfkq*ik*prfk**iiqq*ikqpkfkq*iik**i*
qqgfk**ivk**ikqpgfk**iik*ri*qpkfkq*iit*rrk*ikqsskfrn*iqrssfk
*winesk**vk*iivfirtklcf*ifviiew*fsikik*k*rfifflr**kfkl


Frame B:
---NNESSXNESNNDSSNNEIQVAKVQXMNHPNNESSNNESSSQSSNNGSSNNESSNQGS
NNESSSHGSNNESSSKGSNNESSSHGSNNESSSQGSNNESSNNESSNQNSNNESSNNESS
SKGSNNESSNNESSSQGSNNESSNNESNNQNSNNESSHKEESESNSHQSSETESKDQVSN
SGSMNQSSESSESSSLSEQSSAFESSSSSSGNSQSKSSENDDSSSSSGSKNSNS


Frame C:
---imnhqxmnqimihritksk*prfxq*iiqimnhrimnqvakvqimdhqimnqvtkvq
tmnqvamaqtmnqaakvqtmnqvamvqtmnqvakvqimnhptmnqatkiqtmnhqimnla
arvqimnrqimnqaarvqimnhqitnlttkiqtmnhhikkkvnqtvikvqklnpkikfqi
vdq*ikvvsqvnhrlyqnkalllnlrhhrvvilnqnqvkmtihllpqvvkiqt


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHN835 (CHN835Q) /CSM/CH/CHN8-B/CHN835Q.Seq.d/ 1366 0.0
SHD462 (SHD462Q) /CSM/SH/SHD4-C/SHD462Q.Seq.d/ 1291 0.0
CHO581 (CHO581Q) /CSM/CH/CHO5-D/CHO581Q.Seq.d/ 1285 0.0
SHF282 (SHF282Q) /CSM/SH/SHF2-D/SHF282Q.Seq.d/ 1189 0.0
SHF413 (SHF413Q) /CSM/SH/SHF4-A/SHF413Q.Seq.d/ 1187 0.0
SHC615 (SHC615Q) /CSM/SH/SHC6-A/SHC615Q.Seq.d/ 1146 0.0
SHD101 (SHD101Q) /CSM/SH/SHD1-A/SHD101Q.Seq.d/ 1122 0.0
SHD443 (SHD443Q) /CSM/SH/SHD4-B/SHD443Q.Seq.d/ 1118 0.0
SHH394 (SHH394Q) /CSM/SH/SHH3-D/SHH394Q.Seq.d/ 1009 0.0
SHB773 (SHB773Q) /CSM/SH/SHB7-D/SHB773Q.Seq.d/ 597 e-170

own update 2002.10. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 1205 0.0 13
U23947|U23947.2 Mycoplasma pulmonis variable surface antigen locus, complete sequence. 36 8e-04 8
AG479793|AG479793.1 Mus musculus molossinus DNA, clone:MSMg01-373N19.TJ, genomic survey sequence. 30 0.009 5
BQ545414|BQ545414.1 EST629041 TpMugugaSh01 Theileria parva cDNA clone TPFAP34, mRNA sequence. 42 0.018 3
AL460759|AL460759.1 T. brucei sheared genomic DNA clone 76h08, forward sequence. 26 0.030 5
AC100833|AC100833.1 Homo sapiens chromosome 17 clone CTD-3126C5 map 17, LOW-PASS SEQUENCE SAMPLING. 40 0.044 2
BX005344|BX005344.13 Zebrafish DNA sequence from clone CH211-219E17. 40 0.097 2
BQ699205|BQ699205.1 NXRV120_G11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV120_G11 5', mRNA sequence. 48 0.22 1
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 42 0.27 22
AP007597|AP007597.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 3, clone:LjT39D18, TM0797. 34 0.46 2
dna update 2005. 8. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014187_629(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 48 2e-04
AL844505_289(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 47 4e-04
AB243100_1(AB243100|pid:none) Entamoeba histolytica SREHP gene f... 46 0.001
A32126_1(A32126|pid:none) DNA encoding anti-P.falciparum antigen... 44 0.004
X53024_1(X53024|pid:none) P.falciparum DNA for erythrocyte membr... 44 0.004
BC077588_1(BC077588|pid:none) Xenopus laevis Swift, mRNA (cDNA c... 44 0.005
AE014187_372(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 44 0.006
AL844508_260(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.013
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.018
AL035476_45(AL035476|pid:none) Plasmodium falciparum MAL4P3. 42 0.018
protein update 2009. 5.20
PSORT

psg: 0.75 gvh: 0.20 alm: 0.70 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: cytoskeletal
12.0 %: mitochondrial

>> prediction for CHN835 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHN835Z
3' end seq.
>CHN835Z.Seq
NNNNNNNNNNCAAATAATGAATCATCAANTAATGAATCAAATAATGATTCATCGAATAAC
GAAATCCAAGTAGCCAAGGTTCAANCAATGAATCATCCAAATAATGAATCATCGAATAAT
GAATCAAGTAGCCAAAGTTCAAATAATGGATCATCAAATAATGAATCAAGTAACCAAGGT
TCAAACAATGAATCAAGTAGCCATGGCTCAAACAATGAATCAAGCAGCAAAGGTTCAAAC
AATGAATCAAGTAGCCATGGTTCAAACAATGAATCAAGTAGCCAAGGTTCAAATAATGAA
TCATCCAACAATGAATCAAGCAACCAAAATTCAAACAATGAATCATCAAATAATGAATCT
AGCAGCAAGGGTTCAAATAATGAATCGTCAAATAATGAATCAAGCAGCCAGGGTTCAAAT
AATGAATCATCAAATAACGAATCTAACAACCAAAATTCAAACAATGAATCATCACATAAA
GAAGAAAGTGAATCAAACAGTCATCAAAGTTCAGAAACTGAATCCAAAGATCAAGTTTCA
AATAGTGGATCAATGAATCAAAGTAGTGAGTCAAGTGAATCATCGTCTTTATCAGAACAA
AGCTCTGCTTTTGAATCTTCGTCATCATCGAGTGGTAATTCTCAATCAAAATCAAGTGAA
AATGACGATTCATCTTCTTCCTCAGGTAGTAAAAATTCAAACTCT
Length of 3' end seq. 705
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -