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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN795
Library CH
(Link to library)
Clone ID CHN795
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15935-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHN795 (CHN795Q) /CSM/CH/CHN7-D/CHN795Q.Seq.d/
XXXXXXXXXXTCCAACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGGTAC
ATTTGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGGTAA
ACTTTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCACTGG
TCCAAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACTTCA
TTGTGGTACTGTAATTAAACCAAGAAAGGAAGATATCTTATTCGTTCCACAAAAACCTTA
CTTGGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATATGAA
GAAATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAATCT
TACTATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTCTGG
TGGTCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGCTAT
TCTCGATGAATGTACAAGCGCCGTCTCTGATGAAGTCGAAGGTAAAATCTATGAAACGTT
GTAAAAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTACC
ACGATTACGTTTTACTCTTTAATGGTAGAGGGGTGGGAACGGTCAAAAAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---NRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGP
NGSGKSSLFRILGELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKK
LGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAIL
DECTSAVSDEVEGKIYETL*ktwyhfihrfssstikslprlrftl*w*rggngqk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ptdhqqvvqplsmvvvhllrvissnsrmfqsyhqrvnfw*ri*isklcqikm**slv
qmvqvrvhslessvnyghfivvl*lnqerkisysfhknltwywvpsvikssihivmmi*r
nwvspmmifnif*qp*iqillsfvngigmipkigslpslvvknkelpwlvsfiivhntlf
smnvqapslmkskvksmkrckklgitlftvshrpqlrayhdyvllfngrgvgtvkn


Frame B:
---qqiiskwcnhclwwwyic*g*fhqirecfnritrg*tfgrefrfpsyakskcndhws
kwfr*eftl*npr*imatslwycn*tkkgrylirstktllgigypp*snhlst*s**yee
igchr**sstsfsnrrsksyyhssmelg*yqrlvhcplwwsktknchgssllssstirys
r*mykrrl**srr*nl*nvvknlvslyspflivhn*elttitfyslmvegwersk


Frame C:
---NRSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGP
NGSGKSSLFRILGELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKK
LGVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAIL
DECTSAVSDEVEGKIYETL*ktwyhfihrfssstikslprlrftl*w*rggngqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN795 (CHN795Q) /CSM/CH/CHN7-D/CHN795Q.Seq.d/                       1388   0.0
VHM519 (VHM519Q) /CSM/VH/VHM5-A/VHM519Q.Seq.d/                       1352   0.0
CHR260 (CHR260Q) /CSM/CH/CHR2-C/CHR260Q.Seq.d/                       1348   0.0
VHQ284 (VHQ284Q) /CSM/VH/VHQ2-D/VHQ284Q.Seq.d/                       1338   0.0
VHB490 (VHB490Q) /CSM/VH/VHB4-D/VHB490Q.Seq.d/                       1338   0.0
FC-AB11 (FC-AB11Q) /CSM/FC/FC-AB/FC-AB11Q.Seq.d/                     1338   0.0
CHF448 (CHF448Q) /CSM/CH/CHF4-B/CHF448Q.Seq.d/                       1338   0.0
FC-031 (FC-031Q) /CSM/CG/CG-FC/FC-031Q.Seq.d/                        1338   0.0
VHN686 (VHN686Q) /CSM/VH/VHN6-D/VHN686Q.Seq.d/                       1336   0.0
VHM659 (VHM659Q) /CSM/VH/VHM6-C/VHM659Q.Seq.d/                       1336   0.0
own update 2002.10. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY077633|AY077633.1 Dictyostelium discoideum ABC transporter ABCD.2 gene, complete cds.  1164   0.0    2
AF334035|AF334035.2 Sterkiella histriomuscorum putative ABC transporter gene, partial sequence.    56   7e-05  2
BX563734|BX563734.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse68e09_p1c.    44   0.003  2
BX557866|BX557866.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse35c01_p1c.    44   0.003  2
BX553115|BX553115.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse127d08_p1c.    44   0.003  2
U97407|U97407.2 Caenorhabditis elegans cosmid C34G6, complete sequence.    52   0.014  1
AE014898|AE014898.1 Streptococcus mutans UA159 section 46 of 185 of the complete genome.    52   0.014  1
DR611648|DR611648.1 EST1001776 FvG Gibberella moniliformis cDNA clone FVGEC02, mRNA sequence.    52   0.014  1
DR606347|DR606347.1 EST996475 FvG Gibberella moniliformis cDNA clone FVGBL28, mRNA sequence.    52   0.014  1
AZ539542|AZ539542.1 ENTDK30TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52   0.014  1
dna update 2005. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY077633_1(AY077633|pid:none) Dictyostelium discoideum ABC trans...   404   e-123
AE014298_3062(AE014298|pid:none) Drosophila melanogaster chromos...   215   2e-61
AE017343_388(AE017343|pid:none) Cryptococcus neoformans var. neo...   216   5e-60
T15802(T15802) hypothetical protein C44B7.9 - Caenorhabditis ele...   213   4e-59
T15801(T15801) hypothetical protein C44B7.8 - Caenorhabditis ele...   211   1e-58
AK144060_1(AK144060|pid:none) Mus musculus adult male kidney cDN...   211   2e-58
BC070657_1(BC070657|pid:none) Xenopus laevis hypothetical protei...   210   4e-58
AJ851381_1(AJ851381|pid:none) Gallus gallus mRNA for hypothetica...   209   8e-58
BC009119_1(BC009119|pid:none) Mus musculus ATP-binding cassette,...   209   8e-58
AK004660_1(AK004660|pid:none) Mus musculus adult male lung cDNA,...   208   1e-57
protein update 2009. 5.20
PSORT 

 psg: 0.88  gvh: 0.36  alm: 0.43  top: 0.27  tms: 0.00  mit: 0.33  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHN795 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHN795Z
3' end seq. 
>CHN795Z.Seq
NNNNNNNNNNTCCAACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGGTAC
ATTTGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGGTAA
ACTTTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCACTGG
TCCAAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACTTCA
TTGTGGTACTGTAATTAAACCAAGAAAGGAAGATATCTTATTCGTTCCACAAAAACCTTA
CTTGGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATATGAA
GAAATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAATCT
TACTATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTCTGG
TGGTCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGCTAT
TCTCGATGAATGTACAAGCGCCGTCTCTGATGAAGTCGAAGGTAAAATCTATGAAACGTT
GTAAAAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTACC
ACGATTACGTTTTACTCTTTAATGGTAGAGGGGTGGGAACGGTCAAAAAT
Length of 3' end seq. 710
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -