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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN788
Library CH
(Link to library)
Clone ID CHN788
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15679-1
Original site URL
Representative seq. ID CHN788P
(Link to Original site)
Representative DNA sequence 
>CHN788 (CHN788Q) /CSM/CH/CHN7-D/CHN788Q.Seq.d/
AGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACATCATCAAAAATGTCATTGTA
TAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAAGCTAATAGAGAGTGTCAAAT
TCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTTGAATTTGATTCGGAACCAAA
TGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAAGATAATGAAGAAGCAAAATT
GGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCCAATTGGTCCAGTGATTTAAT
GTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGATGATTCAAGTGATGATTTAGT
TGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTGGCAGGCTGCAACCTAGCAAA
CAAATCATCCGATGAGGCTGTAAAAGATTTGCAATCACTTTTACCAGACCAAAAAGTTAT
CCCATTGGGTAAGAATCCAAGCCAAGACATTAGATTGTTGATGAATGGTGGTGGGTGGTG
CTGCCAATGGTGGTGGTGCTGCCAATGGCGCATCGTCCAGTGACGAACATTCAATTAATT
GTCCAGTXXXXXXXXXXAGTTCAAGAGTCAAATACCTTTATCATTAGTAATTACACTGAA
AAAGAAACTCATAAAGATATCTCTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCA
GTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGAACAAAGTTAAAGGTATTTCA
AATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCT
TTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAA
CAACAACAACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCA
GCATCAACACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAAT
GTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAA
TCTTCAACAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCT
GAAATGAATGCTAATGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCT
GCAAGATTATCATCCATTATTAAATCTTTNATATTCAGATTCCATTAAATGGTTTTAAAG
AAAAAACAAAAATATTTAAAAATAACAAAAC
sequence update 2002.10.25
Translated Amino Acid sequence 
r*wcylffnfn*niiknviv*cny*diyystsks**rvsnsnhylw**c*ynl*i*fgtk
*ikr*lkrn*il*r**rskig*snenvfq*yriqlvq*fnvkdhhhqfgsiy**fk**fs
*ylefg***ylwfgrlqpskqiir*gckrfaitftrpksypig*eskprh*IVDEWWWVV
LPMVVVLPMAHRPVTNIQLIVQ---

---VQESNTFIISNYTEKETHKDISKDVQYLRLLTKAVQLCKVKNEKDIMNKVKGISNLS
INDNNNSFNQTPIKNQPFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSAST
PPPPSQMLNEQPSKTINVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEMN
ANDWSITKESGTVLFESARLSSIIKSXIFRFH*mvlkkkqkylkitk
Translated Amino Acid sequence (All Frames) 
Frame A:
r*wcylffnfn*niiknviv*cny*diyystsks**rvsnsnhylw**c*ynl*i*fgtk
*ikr*lkrn*il*r**rskig*snenvfq*yriqlvq*fnvkdhhhqfgsiy**fk**fs
*ylefg***ylwfgrlqpskqiir*gckrfaitftrpksypig*eskprh*IVDEWWWVV
LPMVVVLPMAHRPVTNIQLIVQ---

---ssrvkylyh**lh*krns*ryl*rcsis*iinqsssiv*s*k*kryneqs*ryfkfi
n******f*snsn*kstff*iiinfftftsfl*itnstttttnlyhfnsititiifisin
ttttitna**ttk*nyqcny*csy*fkwyrfnfirn*ifnk*icl*ikm*ty**n*s*ne
c**leyykriwysfirickiiihy*ifxiqiplngfkektkifknnk

Frame B:
dsgvtyfsilietsskmslynviiktfitqlqkanrecqiqiitygdsvntifefdsepn
elkdslkeikfskdneeaklgeamrmcfnniesnwssdlmskiiiissgqstddssddlv
dilsldnnsiyglagcnlankssdeavkdlqsllpdqkviplgknpsqdirllmngggwc
cqwwwccqwrivq*rtfn*lss---

---VQESNTFIISNYTEKETHKDISKDVQYLRLLTKAVQLCKVKNEKDIMNKVKGISNLS
INDNNNSFNQTPIKNQPFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSAST
PPPPSQMLNEQPSKTINVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEMN
ANDWSITKESGTVLFESARLSSIIKSXIFRFH*mvlkkkqkylkitk

Frame C:
ivvllifqf*lkhhqkchcim*llrhlllnfkkliesvkfkslpmvivliqslnlirnqm
n*kia*kklnslkimkkqnwvkq*ecvsiisnpigpvi*cqrssssvrvnllmiqvmi*l
is*vwiiivsmvwqaat*qtnhpmrl*kicnhfyqtkklshwvriqaktldc**mvvgga
angggaangasssdehsincp---

---fksqiplslvitlkkklikislkmfnildy*pkqfncvklkmkki**tklkvfqiyq
lmiiiivliklqlkinlflnhhqllhlhqlsldhqfnnnnnkplplqlnhhhhhlhqhqh
hhhhhkclmnnqvklsm*llm*lliqvvpf*lhsklnlqqmnlsln*nvnllmklilk*m
lmigvlqknlvqfysnlqdyhpllnlxysdsikwf*rknkni*k*qn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/                       1041   0.0
CHN788 (CHN788Q) /CSM/CH/CHN7-D/CHN788Q.Seq.d/                       1041   0.0
AHE569 (AHE569Q) /CSM/AH/AHE5-C/AHE569Q.Seq.d/                       1041   0.0
AHA357 (AHA357Q) /CSM/AH/AHA3-C/AHA357Q.Seq.d/                       1041   0.0
SHE684 (SHE684Q) /CSM/SH/SHE6-D/SHE684Q.Seq.d/                        991   0.0
AHA131 (AHA131Q) /CSM/AH/AHA1-B/AHA131Q.Seq.d/                        979   0.0
CHI279 (CHI279Q) /CSM/CH/CHI2-D/CHI279Q.Seq.d/                        973   0.0
AHM223 (AHM223Q) /CSM/AH/AHM2-A/AHM223Q.Seq.d/                        955   0.0
AHI541 (AHI541Q) /CSM/AH/AHI5-B/AHI541Q.Seq.d/                        954   0.0
AHH355 (AHH355Q) /CSM/AH/AHH3-C/AHH355Q.Seq.d/                        952   0.0
own update 2002.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   141   1e-38  15
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   2e-11  16
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    52   2e-10  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    56   1e-09  17
AP005140|AP005140.4 Homo sapiens genomic DNA, chromosome 11 clone:CMB9-65A1, complete sequence.    64   2e-09  7
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    44   2e-09  18
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40   3e-09  14
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   9e-09  13
AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome.    42   1e-08  34
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-08  16
dna update 2005. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso...   144   8e-33
T25223(T25223) hypothetical protein T24B8.2 - Caenorhabditis ele...    35   4.2
CP000939_1534(CP000939|pid:none) Clostridium botulinum B1 str. O...    35   5.5
CP000962_1611(CP000962|pid:none) Clostridium botulinum A3 str. L...    35   5.5
CP000728_1501(CP000728|pid:none) Clostridium botulinum F str. La...    35   7.2
AB049544_1(AB049544|pid:none) Porcine enterovirus 10 gene for RN...    34   9.4
AF363453_1(AF363453|pid:none) Porcine enterovirus 9 strain UKG/4...    34   9.4
protein update 2008.11. 5
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHN788 is nuc
5' end seq. ID CHN788F
5' end seq. 
>CHN788F.Seq
AGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACATCATCAAAAATGTCATTGTA
TAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAAGCTAATAGAGAGTGTCAAAT
TCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTTGAATTTGATTCGGAACCAAA
TGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAAGATAATGAAGAAGCAAAATT
GGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCCAATTGGTCCAGTGATTTAAT
GTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGATGATTCAAGTGATGATTTAGT
TGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTGGCAGGCTGCAACCTAGCAAA
CAAATCATCCGATGAGGCTGTAAAAGATTTGCAATCACTTTTACCAGACCAAAAAGTTAT
CCCATTGGGTAAGAATCCAAGCCAAGACATTAGATTGTTGATGAATGGTGGTGGGTGGTG
CTGCCAATGGTGGTGGTGCTGCCAATGGCGCATCGTCCAGTGACGAACATTCAATTAATT
GTCCAGTNNNNNNNNNN
Length of 5' end seq. 617
3' end seq. ID CHN788Z
3' end seq. 
>CHN788Z.Seq
NNNNNNNNNNAGTTCAAGAGTCAAATACCTTTATCATTAGTAATTACACTGAAAAAGAAA
CTCATAAAGATATCTCTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCAGTTCAAT
TGTGTAAAGTTAAAAATGAAAAAGATATAATGAACAAAGTTAAAGGTATTTCAAATTTAT
CAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTG
AATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAAC
AACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAA
CACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTA
TTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTCAA
CAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGA
ATGCTAATGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAGAT
TATCATCCATTATTAAATCTTTNATATTCAGATTCCATTAAATGGTTTTAAAGAAAAAAC
AAAAATATTTAAAAATAACAAAAC
Length of 3' end seq. 684
Connected seq. ID CHN788P
Connected seq. 
>CHN788P.Seq
AGATAGTGGTGTTACTTATTTTTCAATTTTAATTGAAACATCATCAAAAATGTCATTGTA
TAATGTAATTATTAAGACATTTATTACTCAACTTCAAAAAGCTAATAGAGAGTGTCAAAT
TCAAATCATTACCTATGGTGATAGTGTTAATACAATCTTTGAATTTGATTCGGAACCAAA
TGAATTAAAAGATAGCTTAAAAGAAATTAAATTCTCTAAAGATAATGAAGAAGCAAAATT
GGGTGAAGCAATGAGAATGTGTTTCAATAATATCGAATCCAATTGGTCCAGTGATTTAAT
GTCAAAGATCATCATCATCAGTTCGGGTCAATCTACTGATGATTCAAGTGATGATTTAGT
TGATATCTTGAGTTTGGATAATAATAGTATCTATGGTTTGGCAGGCTGCAACCTAGCAAA
CAAATCATCCGATGAGGCTGTAAAAGATTTGCAATCACTTTTACCAGACCAAAAAGTTAT
CCCATTGGGTAAGAATCCAAGCCAAGACATTAGATTGTTGATGAATGGTGGTGGGTGGTG
CTGCCAATGGTGGTGGTGCTGCCAATGGCGCATCGTCCAGTGACGAACATTCAATTAATT
GTCCAGT----------AGTTCAAGAGTCAAATACCTTTATCATTAGTAATTACACTGAA
AAAGAAACTCATAAAGATATCTCTAAAGATGTTCAATATCTTAGATTATTAACCAAAGCA
GTTCAATTGTGTAAAGTTAAAAATGAAAAAGATATAATGAACAAAGTTAAAGGTATTTCA
AATTTATCAATTAATGATAATAATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCT
TTTTTTGAATCATCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAA
CAACAACAACAACAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCA
GCATCAACACCACCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAAT
GTAACTATTGATGTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAA
TCTTCAACAAATGAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCT
GAAATGAATGCTAATGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCT
GCAAGATTATCATCCATTATTAAATCTTTNATATTCAGATTCCATTAAATGGTTTTAAAG
AAAAAACAAAAATATTTAAAAATAACAAAAC
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -