AFG841
Library AF
(Link to library)
Clone ID AFG841
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID AFG841Z
(Link to Original site)
Representative DNA sequence
>AFG841 (AFG841Q) /CSM/AF/AFG8-B/AFG841Q.Seq.d/
XXXXXXXXXXGAANCCATCGCCAAAGGTGGTGAACCAGCTTGGAAAGTTTCCATTCAATT
GATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTG
GTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGA
GAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTAT
TGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCG
TCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGG
TGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGG
TCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACA
TAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTT
TGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTC
TAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTC
AAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGA
TGTTAATNATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---XIAKGGEPAWKVSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPEN
YFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGG
VKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFV
QPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDV
NXVIKFAARSNL*inilk


Translated Amino Acid sequence (All Frames)
Frame A:
---xpspkvvnqlgkfpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqr
itllklnklpshhptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rv
vlkttnvmvswlsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttl
fnqviyidsclkmpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlm
lxmssnslldqtcksiy*k


Frame B:
---xhrqrw*tslesfhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*sre
llc*s*tsclltiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgw
c*klpt*wfhgcqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlc
str*fi*thv*rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c
*xchqirc*iklvnqyik


Frame C:
---XIAKGGEPAWKVSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPEN
YFAEVEQAAFSPSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGG
VKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFV
QPGDLYRLMSEDAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDV
NXVIKFAARSNL*inilk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1513 0.0
AFG841 (AFG841Q) /CSM/AF/AFG8-B/AFG841Q.Seq.d/ 1513 0.0
AFE580 (AFE580Q) /CSM/AF/AFE5-D/AFE580Q.Seq.d/ 1505 0.0
CFI568 (CFI568Q) /CSM/CF/CFI5-C/CFI568Q.Seq.d/ 1483 0.0
AFI254 (AFI254Q) /CSM/AF/AFI2-C/AFI254Q.Seq.d/ 1467 0.0
CFI634 (CFI634Q) /CSM/CF/CFI6-B/CFI634Q.Seq.d/ 1465 0.0
CFF134 (CFF134Q) /CSM/CF/CFF1-B/CFF134Q.Seq.d/ 1465 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1451 0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/ 1449 0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1447 0.0

own update 2004. 4.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1513 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1513 0.0 1
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 1e-16 2
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 1e-16 2
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 82 1e-16 2
AR375090|AR375090.1 Sequence 96 from patent US 6605709. 76 1e-16 2
CC133697|CC133697.1 NDL.83G19.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.83G19, DNA sequence. 46 7e-14 6
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 9e-13 1
CD645756|CD645756.1 SSPG103 SS pectin Sclerotinia sclerotiorum cDNA similar to Peroxisomal catalase, mRNA sequence. 68 1e-12 2
BX554380|BX554380.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse15b01_q1c. 74 3e-09 1
dna update 2004. 3.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 518 e-146
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 291 2e-77
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 291 2e-77
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 282 7e-75
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 281 2e-74
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 278 2e-73
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 273 4e-72
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 271 1e-71
(Q9PWF7) RecName: Full=Catalase; EC=1.11.1.6; &AB03187... 263 6e-69
AY242059_1(AY242059|pid:none) Melopsittacus undulatus catalase (... 259 8e-68
protein update 2009. 4.21
PSORT

psg: 0.79 gvh: 0.23 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFG841 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFG841Z
3' end seq.
>AFG841Z.Seq
----------GAANCCATCGCCAAAGGTGGTGAACCAGCTTGGAAAGTTTCCATTCAATT
GATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTG
GTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGA
GAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTAT
TGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCG
TCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGG
TGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGG
TCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACA
TAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTT
TGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTC
TAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTC
AAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGA
TGTTAATNATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATTAAAAA
Length of 3' end seq. 769
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -