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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHN775
Library CH
(Link to library)
Clone ID CHN775
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16419-1
Original site URL
Representative seq. ID CHN775P
(Link to Original site)
Representative DNA sequence 
>CHN775 (CHN775Q) /CSM/CH/CHN7-D/CHN775Q.Seq.d/
ATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGT
TAAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGAAGTATTTTTTATGA
TATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAAT
GTCATAAATCTTCGGAATGTATTGTTATAAATTATACXXXXXXXXXXAGTTTGGTTNTTT
AAGATGTCCACCNAATTCATGAATGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAA
AGGTTCCCCCATGATAGATGTTCATTAAGATGTCCACATGNCCATGAATGTAAAGTTGAT
CACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCA
TTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTA
AAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATT
AGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAA
AAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAA
TGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCACCAAGACAT
GAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGT
TCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGAAAAAGAATGTTGC
GTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACCAAAACATGAATGT
AGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAANGATTGTTTAACTTGT
GAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTACCAATNATA
AAGAAAATTGTTGGAAAAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
ysilflinsn*kkkq*ltklkikk**RMLFLKNIEVFFMIFLVSKSYATDCNKITNEXXC
HKSSECIVINY---

---VWXFKMSTXFMNVDLMTKVINAV*rfphdrcslrcphxheckvdhngkeccvrshrp
pppevcslrcppkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrser
phppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccv
kvhhdkcslrcppgheckvdqhekeccvvahrpppkcslrcppkhecrinhfgeeccvks
rxdcltcedlncerkglhcamktvpxikkivgk
Translated Amino Acid sequence (All Frames) 
Frame A:
iiqfyf*siqikkknnn*ls*k*knnkgccf*kilkyfl*yslyqnpmrrivikllmxxn
vinlrnvll*ii---

---slvx*dvhxihecrfndqghqccvkvpp**mfikmstxp*m*s*sqw*rmlrqip*t
tttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*wfkmlcpfrk
ttpttt*km**emptrp*m*s*stwkrmlrccp*tttkmlfkmstkt*m*sqplw*rmlc
*sspr*mfiemstrp*m*s*st*krmlrccp*tttkmlikmstkt*m*nqslw*rmlc*k
*kxlfnl*rpkl*kkrftlchenctnxkencwkk

Frame B:
lfnfifnqfklkkktitn*vknkkiikdvvskky*sifydipcikilcdgl**ny**xxm
s*ifgmycykly---

---VWXFKMSTXFMNVDLMTKVINAV*rfphdrcslrcphxheckvdhngkeccvrshrp
pppevcslrcppkheckfddhgkkccvkihcdevcdldcgrgfeckirhdgskccvrser
phppqhekcnkrcppgheckvdqhgkeccvvahrpppkcslrcpprhecrvnhfgeeccv
kvhhdkcslrcppgheckvdqhekeccvvahrpppkcslrcppkhecrinhfgeeccvks
rxdcltcedlncerkglhcamktvpxikkivgk

Frame C:
ysilflinsn*kkkq*ltklkikk**RMLFLKNIEVFFMIFLVSKSYATDCNKITNEXXC
HKSSECIVINY---

---fgxlrcppns*m*i**prssmlckgspmidvh*dvhmxmnvklitmvknvasdpidh
hhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmmvqnvvsvqkd
hthhnmknvirdahqamnvklinmeknvallpidhhqnal*dvhqdmnvesttlvknvvl
kfttinvh*dvhqamnvklinmkknvallpidhhqnah*dvhqnmnvesitlvknavlkv
exiv*lvkt*tvkekvyivp*klyqx*rkllek
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN775 (CHN775Q) /CSM/CH/CHN7-D/CHN775Q.Seq.d/                       1814   0.0
AHC488 (AHC488Q) /CSM/AH/AHC4-D/AHC488Q.Seq.d/                       1554   0.0
CHI363 (CHI363Q) /CSM/CH/CHI3-C/CHI363Q.Seq.d/                       1538   0.0
CHM493 (CHM493Q) /CSM/CH/CHM4-D/CHM493Q.Seq.d/                       1534   0.0
AHC814 (AHC814Q) /CSM/AH/AHC8-A/AHC814Q.Seq.d/                       1532   0.0
CHH443 (CHH443Q) /CSM/CH/CHH4-B/CHH443Q.Seq.d/                       1526   0.0
CHL164 (CHL164Q) /CSM/CH/CHL1-C/CHL164Q.Seq.d/                       1524   0.0
CHL140 (CHL140Q) /CSM/CH/CHL1-B/CHL140Q.Seq.d/                       1524   0.0
AHL722 (AHL722Q) /CSM/AH/AHL7-A/AHL722Q.Seq.d/                       1524   0.0
AHD145 (AHD145Q) /CSM/AH/AHD1-B/AHD145Q.Seq.d/                       1524   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.  1384   0.0    10
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.  1384   0.0    12
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    58   6e-13  4
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    58   2e-12  4
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    58   6e-10  10
AC124167|AC124167.2 Tetraodon nigroviridis clone GSTNB-42J2, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38   0.004  5
AC150841|AC150841.6 Medicago truncatula clone mth2-59m24, WORKING DRAFT SEQUENCE, 8 unordered pieces.    42   0.004  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.013  16
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    42   0.016  2
AC150239|AC150239.2 Sorex araneus clone SA_Ba-527L4, WORKING DRAFT SEQUENCE, 7 ordered pieces.    36   0.018  7
dna update 2005. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...   556   e-163
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   200   6e-50
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...   118   4e-25
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    90   1e-16
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        77   9e-13
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    76   2e-12
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    69   3e-10
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    67   1e-09
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    67   1e-09
FJ380206_1(FJ380206|pid:none) Haliotis discus discus antistasin-...    61   7e-08
protein update 2009. 4. 9
PSORT 

 psg: 1.02  gvh: 0.68  alm: 0.44  top: 0.40  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for CHN775 is exc
5' end seq. ID CHN775F
5' end seq. 
>CHN775F.Seq
ATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGT
TAAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGAAGTATTTTTTATGA
TATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAAT
GTCATAAATCTTCGGAATGTATTGTTATAAATTATACNNNNNNNNNN
Length of 5' end seq. 227
3' end seq. ID CHN775Z
3' end seq. 
>CHN775Z.Seq
NNNNNNNNNNAGTTTGGTTNTTTAAGATGTCCACCNAATTCATGAATGTAGATTTAATGA
CCAAGGTCATCAATGCTGTGTAAAGGTTCCCCCATGATAGATGTTCATTAAGATGTCCAC
ATGNCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTCAGATCCCATAGAC
CACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAATGTAAATTTGATG
ATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTG
GTAGAGGTTTTGAATGTAAAATTAGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAA
GACCACACCCACCACAACATGAAAAATGTAATAAGAGATGCCCACCAGGCCATGAATGTA
AAGTTGATCAACATGGAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCT
CTTTAAGATGTCCACCAAGACATGAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTG
TTAAAGTTCACCACGATAAATGTTCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTG
ATCAACATGAAAAAGAATGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCATTAA
GATGTCCACCAAAACATGAATGTAGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAA
GTAGAAANGATTGTTTAACTTGTGAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTG
CCATGAAAACTGTACCAATNATAAAGAAAATTGTTGGAAAAAG
Length of 3' end seq. 823
Connected seq. ID CHN775P
Connected seq. 
>CHN775P.Seq
ATTATTCAATTTTATTTTTAATCAATTCAAATTAAAAAAAAAAACAATAACTAACTAAGT
TAAAAATAAAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGAAGTATTTTTTATGA
TATTCCTTGTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAANAANAAT
GTCATAAATCTTCGGAATGTATTGTTATAAATTATAC----------AGTTTGGTTNTTT
AAGATGTCCACCNAATTCATGAATGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAA
AGGTTCCCCCATGATAGATGTTCATTAAGATGTCCACATGNCCATGAATGTAAAGTTGAT
CACAATGGTAAAGAATGTTGCGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCA
TTAAGATGCCCACCAAAACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTA
AAGATTCATTGTGATGAAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATT
AGACATGATGGTTCAAAATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACATGAA
AAATGTAATAAGAGATGCCCACCAGGCCATGAATGTAAAGTTGATCAACATGGAAAAGAA
TGTTGCGTTGTTGCCCATAGACCACCACCAAAATGCTCTTTAAGATGTCCACCAAGACAT
GAATGTAGAGTCAACCACTTTGGTGAAGAATGTTGTGTTAAAGTTCACCACGATAAATGT
TCATTGAGATGTCCACCAGGCCATGAATGTAAAGTTGATCAACATGAAAAAGAATGTTGC
GTTGTTGCCCATAGACCACCACCAAAATGCTCATTAAGATGTCCACCAAAACATGAATGT
AGAATCAATCACTTTGGTGAAGAATGCTGTGTTAAAAGTAGAAANGATTGTTTAACTTGT
GAAGACCTAAACTGTGAAAGAAAAGGTTTACATTGTGCCATGAAAACTGTACCAATNATA
AAGAAAATTGTTGGAAAAAG
Length of connected seq. 1030
Full length Seq ID -
Full length Seq. -
Length of full length seq. -