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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN738
Library CH
(Link to library)
Clone ID CHN738
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHN738P
(Link to Original site)
Representative DNA sequence 
>CHN738 (CHN738Q) /CSM/CH/CHN7-B/CHN738Q.Seq.d/
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAAC
CACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCG
CTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGXXXXXXXXXXAGGTA
AATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCACTGGTCTTAGATATG
GTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATG
CTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATG
AAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTT
ACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAA
ATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTA
GAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTCCAG
GAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCG
ATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTC
CTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATC
CAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTA
CTTCTTCTGATGCTGGGGTTATATTTTAAGGTGTTCATTGGATATTCCAAAAAAATAAAA
AAAAAAAATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
ci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*i
qikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpi
qkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKLVFHQAHLYL
QLELVLIWGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFD---

---GKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGIPGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIF*gvhwif
qknkkkky
Translated Amino Acid sequence (All Frames) 
Frame A:
ivynifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfr
fk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyq
skrlll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliyt
ys*n*c*fgvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylpismvmeflm---

---r*mw*scwcrs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yycynw
frll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsst
iscw*sla*ykw*wysrcw*twysrnhsilnlwstinsnksncirfkwlfqi*s*fqfkl
llcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*cwgyilrcsldi
pkk*kkki

Frame B:
lyiiflniyiniy*yininkmkilyslllissiilntvlnissqvydqrilalkgkcyld
snknalydegepgfgnveislgnatdykgnkypiryssadgtfiydgltqrttyeftftn
pkdyyfetyektlacppgvpcirptvsadnlaadllvantfayniplikqvgvssgssil
tvrisvdlglc*ansttnsttysttysttntstiyw*crrwfiiyryqw*wnf*---

---GKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGIPGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIF*gvhwif
qknkkkky

Frame C:
ci*yf*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*i
qikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpi
qkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKLVFHQAHLYL
QLELVLIWGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFD---

---vnvvvllvpeliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvilllqlv
sitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhn
ivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvqii
iv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlglyfkvfigys
kkikkkni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN738 (CHN738Q) /CSM/CH/CHN7-B/CHN738Q.Seq.d/                       1503   0.0
SHB816 (SHB816Q) /CSM/SH/SHB8-A/SHB816Q.Seq.d/                       1405   0.0
SHB323 (SHB323Q) /CSM/SH/SHB3-A/SHB323Q.Seq.d/                       1405   0.0
SHB169 (SHB169Q) /CSM/SH/SHB1-C/SHB169Q.Seq.d/                       1405   0.0
SHB143 (SHB143Q) /CSM/SH/SHB1-B/SHB143Q.Seq.d/                       1405   0.0
SHB113 (SHB113Q) /CSM/SH/SHB1-A/SHB113Q.Seq.d/                       1405   0.0
CHN518 (CHN518Q) /CSM/CH/CHN5-A/CHN518Q.Seq.d/                       1405   0.0
AHI723 (AHI723Q) /CSM/AH/AHI7-A/AHI723Q.Seq.d/                       1405   0.0
SHB407 (SHB407Q) /CSM/SH/SHB4-A/SHB407Q.Seq.d/                       1403   0.0
SHB317 (SHB317Q) /CSM/SH/SHB3-A/SHB317Q.Seq.d/                       1400   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   0.002  29
BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    50   0.11   1
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    32   0.14   33
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    34   0.17   10
BX263864|BX263864.3 Gallus gallus multi-tissues normalized and once-subtracted cDNA  library (gcal) clone gcal0009c.b.04, 5prim end (M13R primer).    44   0.39   2
BX263863|BX263863.3 Gallus gallus multi-tissues normalized and once-subtracted cDNA  library (gcal) clone gcal0009c.b.04, 3prim end (M13F primer).    44   0.39   2
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   0.90   2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   0.92   2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   0.92   2
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        32   1.0    22
dna update 2005. 7.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    81   1e-13
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    69   5e-10
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    65   6e-09
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    60   2e-07
CP000909_3116(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...    52   4e-05
CP000239_181(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp...    52   7e-05
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    51   1e-04
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    51   1e-04
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    51   1e-04
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    51   1e-04
protein update 2009. 4. 9
PSORT 

 psg: 0.79  gvh: 0.51  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CHN738 is nuc
5' end seq. ID CHN738F
5' end seq. 
>CHN738F.Seq
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAAC
CACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCG
CTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATGNNNNNNNNNN
Length of 5' end seq. 715
3' end seq. ID CHN738Z
3' end seq. 
>CHN738Z.Seq
NNNNNNNNNNAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCA
CTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTC
ATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTG
GTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTA
AACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAA
CCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCAC
AATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTG
AACCTGGTATTCCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAA
GTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATT
ATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATG
CTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTT
ATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATATTTTAAGGTGTTCATTGGATAT
TCCAAAAAAATAAAAAAAAAAAATATA
Length of 3' end seq. 747
Connected seq. ID CHN738P
Connected seq. 
>CHN738P.Seq
ATTGTATATAATATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAA
AATGAAAATATTATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAA
TATTTCATCACAAGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGA
TTCAAATAAAAATGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTC
TTTAGGAAATGCAACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGA
TGGTACATTTATATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAA
TCCAAAAGATTATTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACC
ATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATAC
CTTTGCCTATAACATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACT
TACAGTTAGAATTAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAAC
CACCTACTCAACCACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCG
CTGGTTTATTATTTACCGATATCAATGGTAATGGAATTTTTGATG----------AGGTA
AATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCACTGGTCTTAGATATG
GTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACCAATG
CTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTACTATG
AAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTT
ACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAA
ATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTA
GAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTCCAG
GAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCG
ATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTC
CTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATC
CAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTA
CTTCTTCTGATGCTGGGGTTATATTTTAAGGTGTTCATTGGATATTCCAAAAAAATAAAA
AAAAAAAATATA
Length of connected seq. 1442
Full length Seq ID -
Full length Seq. -
Length of full length seq. -