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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN682
Library CH
(Link to library)
Clone ID CHN682
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHN682 (CHN682Q) /CSM/CH/CHN6-D/CHN682Q.Seq.d/
AATAATCCATGTACCATCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTC
AATGTAGATGATAATAACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACT
CATACTCCAGTCAATACTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCA
ACTGGTGTTTCCCATACCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCA
TGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCATGT
ACCGTAGACTCATGCANTAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGAT
AATAATCCATGTACCGTCGATGCCTGTACCAAATNAACAGGTGTTACTCATACCCCAGTC
AATGTAGATGATAACAACAAATGTACAATTGATGCATGTACCAAAGAAGGTGGTGTAACT
CATACCCCAGTCAATACTGATGATAACAATGCCTGTACAATTGATGCATGTACAAAAGAA
AGTGGTGTAACTCATACTCCANTCAATACTGATGATAACAATGCTTGTACCCCTTGACTC
CTGTTCACCATCAACTGGCGTTTTCCCACACCCCAATTAACTGTGATGATANTAATNCAT
GTACCGTAGANTCATGTTCNAAATTCAACCGGGTGGTTGCAACACCTCCAATTCAATGGT
TGATGATAATAATCCATGGTACTGTNGATTCATGTNCCAAAACAAACNGGNGGGTACTTC
ATACCCCCCCTCANTGGTNGNATGATNACAACAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
NNPCTIDACTKSTGVTHTPVNVDDNNKCTIDTCTKEGGVTHTPVNTDDNNACTLDSCSPS
TGVSHTPINCDDNNKCTVDSCSNSTGCVNTPINCDDSNPCTVDSCXNSTGCVNTPVNVDD
NNPCTVDACTKXTGVTHTPVNVDDNNKCTIDACTKEGGVTHTPVNTDDNNACTIDACTKE
SGVTHTPXNTDDNNACTP*llftinwrfptpqltvmixxhvp*xhvxnstgwlqhlqfng
****smvlxihvpkqtggyfipplxgxmxtt---
Translated Amino Acid sequence (All Frames) 
Frame A:
NNPCTIDACTKSTGVTHTPVNVDDNNKCTIDTCTKEGGVTHTPVNTDDNNACTLDSCSPS
TGVSHTPINCDDNNKCTVDSCSNSTGCVNTPINCDDSNPCTVDSCXNSTGCVNTPVNVDD
NNPCTVDACTKXTGVTHTPVNVDDNNKCTIDACTKEGGVTHTPVNTDDNNACTIDACTKE
SGVTHTPXNTDDNNACTP*llftinwrfptpqltvmixxhvp*xhvxnstgwlqhlqfng
****smvlxihvpkqtggyfipplxgxmxtt---


Frame B:
iihvpsmpvlnqqvllipqsm*miitnvqlihvpkkvv*lilqsilmitmpvplipahhq
lvfpipq*tvmiiinvl*ihvqtqlvv*ilqltvtivihvp*thaxiqlvv*tlqsmlmi
iihvpsmpvpnxqvllipqsm*mittnvqlmhvpkkvv*lipqsilmitmpvqlmhvqkk
vv*lilxsilmitmlvpldscspstgvfphpn*l**x*xmyrrxmfxiqpggcntsnsmv
ddnnpwycxfmxqnkxxgtsyppsxvx*xq---


Frame C:
*smyhrcly*inrcysypsqcr***qmyn*ymyqrrwcnsyssqy***qclyp*flltin
wcfpypnkl*****mycrfmfklnwlckysn*l*r**smyrrlmx*fnwlckhssqc***
*smyrrclyqxnrcysypsqcr**qqmyn*cmyqrrwcnsypsqy***qclyn*cmykrk
wcnsysxqy***qclypltpvhhqlafshtpincddxnxctvxscskfnrvvatppiqwl
miiihgtvdscxktnxxvlhtppxwxxdxn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN682 (CHN682Q) /CSM/CH/CHN6-D/CHN682Q.Seq.d/                       1487   0.0
SHA152 (SHA152Q) /CSM/SH/SHA1-C/SHA152Q.Seq.d/                       1322   0.0
SHG549 (SHG549Q) /CSM/SH/SHG5-C/SHG549Q.Seq.d/                       1306   0.0
SHF321 (SHF321Q) /CSM/SH/SHF3-A/SHF321Q.Seq.d/                       1273   0.0
SHF556 (SHF556Q) /CSM/SH/SHF5-C/SHF556Q.Seq.d/                       1263   0.0
SHC589 (SHC589Q) /CSM/SH/SHC5-D/SHC589Q.Seq.d/                       1263   0.0
SHA109 (SHA109Q) /CSM/SH/SHA1-A/SHA109Q.Seq.d/                       1217   0.0
SHA313 (SHA313Q) /CSM/SH/SHA3-A/SHA313Q.Seq.d/                       1213   0.0
CHR684 (CHR684Q) /CSM/CH/CHR6-D/CHR684Q.Seq.d/                       1207   0.0
SHK502 (SHK502Q) /CSM/SH/SHK5-A/SHK502Q.Seq.d/                       1189   0.0
own update 2002.10. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               50   5e-12  6
CK991559|CK991559.1 EST0111 Eyestalk cDNA library Penaeus monodon cDNA clone ES-N-S03-555-W 5' similar to Histidine-rich glycoprotein precursor (Plasmodium lophurae), mRNA sequence.    30   0.002  4
BQ739629|BQ739629.1 PfESToab48c05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9U0J6 Q9U0J6 HYPOTHETICAL 312.5 KD PROTEIN. ;, mRNA sequence.    30   0.004  4
BX231032|BX231032.1 Danio rerio genomic clone DKEY-254O18, genomic survey sequence.    30   0.018  5
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    36   0.029  13
AA549974|AA549974.1 1051m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1051m, DNA sequence.    32   0.39   4
BI670639|BI670639.1 PfESToaa02d11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    30   0.61   4
BQ739648|BQ739648.1 PfESToab48e02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    30   0.62   4
Y08924|Y08924.1 P.falciparum mRNA for AARP2 protein.               30   0.66   5
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    36   0.84   9
dna update 2005. 7.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   304   3e-86
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   298   2e-83
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   298   2e-83
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   261   2e-71
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   219   2e-57
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   223   6e-57
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                120   7e-26
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                110   7e-23
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 96   1e-18
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    94   7e-18
protein update 2009. 4. 9
PSORT 

 psg: 0.82  gvh: 0.28  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHN682 is nuc
5' end seq. ID CHN682F
5' end seq. 
>CHN682F.Seq
AATAATCCATGTACCATCGATGCCTGTACTAAATCAACAGGTGTTACTCATACCCCAGTC
AATGTAGATGATAATAACAAATGTACAATTGATACATGTACCAAAGAAGGTGGTGTAACT
CATACTCCAGTCAATACTGATGATAACAATGCCTGTACCCTTGATTCCTGCTCACCATCA
ACTGGTGTTTCCCATACCCCAATAAACTGTGATGATAATAATAAATGTACTGTAGATTCA
TGTTCAAACTCAACTGGTTGTGTAAATACTCCAATTAACTGTGACGATAGTAATCCATGT
ACCGTAGACTCATGCANTAATTCAACTGGTTGTGTAAACACTCCAGTCAATGTTGATGAT
AATAATCCATGTACCGTCGATGCCTGTACCAAATNAACAGGTGTTACTCATACCCCAGTC
AATGTAGATGATAACAACAAATGTACAATTGATGCATGTACCAAAGAAGGTGGTGTAACT
CATACCCCAGTCAATACTGATGATAACAATGCCTGTACAATTGATGCATGTACAAAAGAA
AGTGGTGTAACTCATACTCCANTCAATACTGATGATAACAATGCTTGTACCCCTTGACTC
CTGTTCACCATCAACTGGCGTTTTCCCACACCCCAATTAACTGTGATGATANTAATNCAT
GTACCGTAGANTCATGTTCNAAATTCAACCGGGTGGTTGCAACACCTCCAATTCAATGGT
TGATGATAATAATCCATGGTACTGTNGATTCATGTNCCAAAACAAACNGGNGGGTACTTC
ATACCCCCCCTCANTGGTNGNATGATNACAACAANNNNNNNNNN
Length of 5' end seq. 824
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -