>CHN559 (CHN559Q) /CSM/CH/CHN5-C/CHN559Q.Seq.d/
XXXXXXXXXXTATATGAAGAAATTCATAATTCCCAATTTGAATAAAGCAGTTCAAGAGGC
TGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGAT
TGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAGAACAAAATCAAAAANATTNATCATTCTTTCTTTTNAA
AAA

---MKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQ
AQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNL
QQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDV
EKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKN
QQLLEQEQNQKXXSFFLXK

Frame A:
---i*rns*fpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmpln
klniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqiki
ynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vm
lkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkk
inny*nknkikxixhsffxk


Frame B:
---yeeihnsqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*t
sstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kf
ttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c
*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkk
stiirtrtkskxxiilsfxk


Frame C:
---MKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQ
AQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNL
QQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDV
EKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKN
QQLLEQEQNQKXXSFFLXK

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHJ885 (SHJ885Q) /CSM/SH/SHJ8-D/SHJ885Q.Seq.d/                        747   0.0
SHJ637 (SHJ637Q) /CSM/SH/SHJ6-B/SHJ637Q.Seq.d/                        747   0.0
SHG652 (SHG652Q) /CSM/SH/SHG6-C/SHG652Q.Seq.d/                        747   0.0
SHD214 (SHD214Q) /CSM/SH/SHD2-A/SHD214Q.Seq.d/                        747   0.0
SHD213 (SHD213Q) /CSM/SH/SHD2-A/SHD213Q.Seq.d/                        747   0.0
SHA293 (SHA293Q) /CSM/SH/SHA2-D/SHA293Q.Seq.d/                        747   0.0
CHS117 (CHS117Q) /CSM/CH/CHS1-A/CHS117Q.Seq.d/                        747   0.0
CHR604 (CHR604Q) /CSM/CH/CHR6-A/CHR604Q.Seq.d/                        747   0.0
CHR581 (CHR581Q) /CSM/CH/CHR5-D/CHR581Q.Seq.d/                        747   0.0
CHN606 (CHN606Q) /CSM/CH/CHN6-A/CHN606Q.Seq.d/                        747   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   704   0.0    5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-29  14
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    36   1e-09  27
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   2e-09  30
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   3e-09  18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   2e-08  18
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    38   6e-08  33
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   8e-08  21
CP000046|CP000046.1 Staphylococcus aureus subsp. aureus COL, complete genome.    34   9e-08  32
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   1e-07  21

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   274   3e-72
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.40
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   1.5
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.5
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.0
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   2.0
CR450845_2(CR450845|pid:none) Zebrafish DNA sequence from clone ...    35   2.0
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   3.4
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   3.4
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.4

 psg: 0.55  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHN559 is nuc

>CHN559Z.Seq
NNNNNNNNNNTATATGAAGAAATTCATAATTCCCAATTTGAATAAAGCAGTTCAAGAGGC
TGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGAT
TGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAGAACAAAATCAAAAANATTNATCATTCTTTCTTTTNAA
AAA