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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN406
Library CH
(Link to library)
Clone ID CHN406
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15639-1
Original site URL
Representative seq. ID CHN406P
(Link to Original site)
Representative DNA sequence 
>CHN406 (CHN406Q) /CSM/CH/CHN4-A/CHN406Q.Seq.d/
GGNATAACCCCAATAGATTTTCGTAATAAACACATTGTTTTTTTTCTATTTTTTTATTAT
TGACATATTTATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAAAAAAAATGTCAAATAG
AANAAGAGAATTTATTGAATATATTGATAGTAGAGAACCAGTTGAAGCAGATATTGATAT
TAGTGATAAAGCAGATAGATTAACAGATATTTATGATAGTGATACATATGGATTAAATGC
AATGAGGGAGACATTACCATCACATTGTTATAANAAAATTCGTGAAGTAATGCAAACAGG
TAGTGCATTANATCCAGAGATTGCAGATATGGTAGCTAATGGTATGAAAGAATGGGCAAT
TAAACAAGGAGCAACACATTATTGTCATTGGTTTTTACCATTGAATGGATTANCAGCAGA
GAAACACGACTCATTCATTAGTATATTCCCAGGTGATGATAAAGNGTTGTTANAATTTTC
AGGTATGCAATTGATTAAAGGTGAACCAGACGCATCATCATTCCCATCGGGTGGTATTCG
TAGTACATGGGAAGCACGXXXXXXXXXXGTAAATTTCCCTTGTATCGTATTGAATACCAT
TGGTGGTGAATCATTACGGTTTCATTCGTGAAGAGATTCTCAGAGAGATGAAAGTTAGTA
GTAGACAAACTGCATTCAATAAAATCATTAAAGATACATTGATTCAACATGTTCGTGTTG
TTTTCAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAG
CAAATTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAAC
TCTTTTCTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCT
TTGAAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAA
CTTTGGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTA
TAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATC
TCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTC
TCATTAAACAAACTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTCCTCAATCAAT
CTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAANGTATTGTTG
AAGATAAATTCTTGGCCAGTTCCAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
x*pq*ifvintlfffyffiidififf*KEKEEKEKKMSNRXREFIEYIDSREPVEADIDI
SDKADRLTDIYDSDTYGLNAMRETLPSHCYXKIREVMQTGSALXPEIADMVANGMKEWAI
KQGATHYCHWFLPLNGLXAEKHDSFISIFPGDDKXLLXFSGMQLIKGEPDASSFPSGGIR
STWEA---

---VNFPCIVLNTIGGESLRFHS*rdsqrdes***tnciq*nh*ryidstcsccfqw*wl
*w*lertrqi*rfskftidsrgfnky*l*key*tlf*k*yslts*igitsrdsl*nl**i
n*nrsklfi*fsfnfgtsslfcsskeyc*icklynaihskskifqstkssifssl*sr*i
cqsln*s*sktfgsh*tn*rfqf*tftrnfpqsicnstne*ss*if*sfrxyc*r*ilgq
fq
Translated Amino Acid sequence (All Frames) 
Frame A:
gitpidfrnkhivfflffyy*hiyfflkrkrrkrkknvk*xkriy*iy***rts*sry*y
***sr*inryl***yiwikcnegdititll*xns*snanr*cixsrdcrygs*wyermgn
*trsntllslvftiewixsretrlih*yipr***xvvxifryaid*r*trriiipigwys
*ymgst---

---VNFPCIVLNTIGGESLRFHS*rdsqrdes***tnciq*nh*ryidstcsccfqw*wl
*w*lertrqi*rfskftidsrgfnky*l*key*tlf*k*yslts*igitsrdsl*nl**i
n*nrsklfi*fsfnfgtsslfcsskeyc*icklynaihskskifqstkssifssl*sr*i
cqsln*s*sktfgsh*tn*rfqf*tftrnfpqsicnstne*ss*if*sfrxyc*r*ilgq
fq

Frame B:
x*pq*ifvintlfffyffiidififf*KEKEEKEKKMSNRXREFIEYIDSREPVEADIDI
SDKADRLTDIYDSDTYGLNAMRETLPSHCYXKIREVMQTGSALXPEIADMVANGMKEWAI
KQGATHYCHWFLPLNGLXAEKHDSFISIFPGDDKXLLXFSGMQLIKGEPDASSFPSGGIR
STWEA---

---*islvsy*iplvvnhygfireeilremkvssrqtafnkiikdtliqhvrvvfngdgy
sgdwkelaksrglanlpstpealtninsekniklfsesnilspvelesrqeilfeiynks
ikieanslydlvstlvlpacfahqkniaesvnsimpfiqsqksfsqpnhqyshlsevves
vnllieanqkllalikqtkdfnsehslatflnqsvipqmnevrkfsdhlexivedkflas
sk

Frame C:
xnpnrfs**thcffsifllltylfffkkkkkkkkkkcqiexenllnilivenqlkqilil
vikqid*qifmivihmd*mq*grhyhhivixkfvk*ckqvvhxiqrlqiw*lmv*kngql
nkeqhiivigfyh*mdxqqrntthslvysqvmikxcxnfqvcn*lkvnqthhhshrvvfv
vhgkh---

---kfplyrieyhww*iitvsfvkrfser*klvvdklhsikslkih*fnmfvlfsmvmvi
vvigknspnlev*qiyhrlqrl*qiltlkrilnsflkvifshqlnwnhvkrfslkfiinq
lkskqtlymi*fqlwyfqlvllikrillnl*tl*chsfkvknlsvnqiinilislkslnl
sis*lkliknfwlslnklkisilnihsqlssinl*fhk*mkfvnflii*xvllkinswpv
pk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN406 (CHN406Q) /CSM/CH/CHN4-A/CHN406Q.Seq.d/                       2232   0.0
CHQ559 (CHQ559Q) /CSM/CH/CHQ5-C/CHQ559Q.Seq.d/                       1382   0.0
CHM692 (CHM692Q) /CSM/CH/CHM6-D/CHM692Q.Seq.d/                       1366   0.0
AHM550 (AHM550Q) /CSM/AH/AHM5-C/AHM550Q.Seq.d/                       1366   0.0
AHL246 (AHL246Q) /CSM/AH/AHL2-B/AHL246Q.Seq.d/                       1366   0.0
CHI606 (CHI606Q) /CSM/CH/CHI6-A/CHI606Q.Seq.d/                       1358   0.0
CHI220 (CHI220Q) /CSM/CH/CHI2-A/CHI220Q.Seq.d/                       1358   0.0
AHL106 (AHL106Q) /CSM/AH/AHL1-A/AHL106Q.Seq.d/                       1358   0.0
AHE346 (AHE346Q) /CSM/AH/AHE3-B/AHE346Q.Seq.d/                       1358   0.0
CHR734 (CHR734Q) /CSM/CH/CHR7-B/CHR734Q.Seq.d/                       1356   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.010  14
AP006716|AP006716.1 Staphylococcus haemolyticus JCSC1435, complete genome.    38   0.032  33
AC007178|AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.    44   0.15   5
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          30   0.22   26
AC107128|AC107128.5 Rattus norvegicus clone CH230-133F6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    40   0.29   7
BX248584|BX248584.1 Blochmannia floridanus complete genome; segment 1/3.    32   0.42   11
AC099803|AC099803.1 Homo sapiens chromosome 18 clone RP11-152J5 map 18, LOW-PASS SEQUENCE SAMPLING.    40   0.49   4
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.54   16
AC098759|AC098759.5 Rattus norvegicus clone CH230-167F9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40   0.69   8
BJ830147|BJ830147.1 Misgurnus anguillicaudatus cDNA clone:dj11b17, 3' end.    34   0.72   3
dna update 2005. 7. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...   417   e-119
CP000885_3336(CP000885|pid:none) Clostridium phytofermentans ISD...   144   8e-33
CP000721_442(CP000721|pid:none) Clostridium beijerinckii NCIMB 8...   137   1e-30
CP001124_3048(CP001124|pid:none) Geobacter bemidjiensis Bem, com...   135   3e-30
CP000252_3065(CP000252|pid:none) Syntrophus aciditrophicus SB, c...   134   7e-30
CP001348_555(CP001348|pid:none) Clostridium cellulolyticum H10, ...   132   2e-29
AE017285_1252(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...   132   3e-29
CP000568_1524(CP000568|pid:none) Clostridium thermocellum ATCC 2...   131   4e-29
CP000112_102(CP000112|pid:none) Desulfovibrio desulfuricans G20,...   130   7e-29
CP001101_909(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...   130   1e-28
protein update 2009. 4. 9
PSORT 

 psg: 0.44  gvh: 0.31  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHN406 is nuc
5' end seq. ID CHN406F
5' end seq. 
>CHN406F.Seq
GGNATAACCCCAATAGATTTTCGTAATAAACACATTGTTTTTTTTCTATTTTTTTATTAT
TGACATATTTATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAAAAAAAATGTCAAATAG
AANAAGAGAATTTATTGAATATATTGATAGTAGAGAACCAGTTGAAGCAGATATTGATAT
TAGTGATAAAGCAGATAGATTAACAGATATTTATGATAGTGATACATATGGATTAAATGC
AATGAGGGAGACATTACCATCACATTGTTATAANAAAATTCGTGAAGTAATGCAAACAGG
TAGTGCATTANATCCAGAGATTGCAGATATGGTAGCTAATGGTATGAAAGAATGGGCAAT
TAAACAAGGAGCAACACATTATTGTCATTGGTTTTTACCATTGAATGGATTANCAGCAGA
GAAACACGACTCATTCATTAGTATATTCCCAGGTGATGATAAAGNGTTGTTANAATTTTC
AGGTATGCAATTGATTAAAGGTGAACCAGACGCATCATCATTCCCATCGGGTGGTATTCG
TAGTACATGGGAAGCACGNNNNNNNNNN
Length of 5' end seq. 568
3' end seq. ID CHN406Z
3' end seq. 
>CHN406Z.Seq
NNNNNNNNNNGTAAATTTCCCTTGTATCGTATTGAATACCATTGGTGGTGAATCATTACG
GTTTCATTCGTGAAGAGATTCTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCA
ATAAAATCATTAAAGATACATTGATTCAACATGTTCGTGTTGTTTTCAATGGTGATGGTT
ATAGTGGTGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTC
CAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAACTCTTTTCTGAAAGTAATA
TTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCTTTGAAATTTATAATAAAT
CAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAACTTTGGTACTTCCAGCTT
GTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTATAATGCCATTCATTCAAA
GTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCGTTGAAT
CTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTCTCATTAAACAAACTAAAG
ATTTCAATTCTGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAATTCCACAAATGA
ATGAAGTTCGTAAATTTTCTGATCATTTAGAANGTATTGTTGAAGATAAATTCTTGGCCA
GTTCCAAAA
Length of 3' end seq. 729
Connected seq. ID CHN406P
Connected seq. 
>CHN406P.Seq
GGNATAACCCCAATAGATTTTCGTAATAAACACATTGTTTTTTTTCTATTTTTTTATTAT
TGACATATTTATTTTTTTTTAAAAAGAAAAAGAAGAAAAAGAAAAAAAAATGTCAAATAG
AANAAGAGAATTTATTGAATATATTGATAGTAGAGAACCAGTTGAAGCAGATATTGATAT
TAGTGATAAAGCAGATAGATTAACAGATATTTATGATAGTGATACATATGGATTAAATGC
AATGAGGGAGACATTACCATCACATTGTTATAANAAAATTCGTGAAGTAATGCAAACAGG
TAGTGCATTANATCCAGAGATTGCAGATATGGTAGCTAATGGTATGAAAGAATGGGCAAT
TAAACAAGGAGCAACACATTATTGTCATTGGTTTTTACCATTGAATGGATTANCAGCAGA
GAAACACGACTCATTCATTAGTATATTCCCAGGTGATGATAAAGNGTTGTTANAATTTTC
AGGTATGCAATTGATTAAAGGTGAACCAGACGCATCATCATTCCCATCGGGTGGTATTCG
TAGTACATGGGAAGCACG----------GTAAATTTCCCTTGTATCGTATTGAATACCAT
TGGTGGTGAATCATTACGGTTTCATTCGTGAAGAGATTCTCAGAGAGATGAAAGTTAGTA
GTAGACAAACTGCATTCAATAAAATCATTAAAGATACATTGATTCAACATGTTCGTGTTG
TTTTCAATGGTGATGGTTATAGTGGTGATTGGAAAGAACTCGCCAAATCTAGAGGTTTAG
CAAATTTACCATCGACTCCAGAGGCTTTAACAAATATTAACTCTGAAAAGAATATTAAAC
TCTTTTCTGAAAGTAATATTCTCTCACCAGTTGAATTGGAATCACGTCAAGAGATTCTCT
TTGAAATTTATAATAAATCAATTAAAATCGAAGCAAACTCTTTATATGATTTAGTTTCAA
CTTTGGTACTTCCAGCTTGTTTTGCTCATCAAAAGAATATTGCTGAATCTGTAAACTCTA
TAATGCCATTCATTCAAAGTCAAAAATCTTTCAGTCAACCAAATCATCAATATTCTCATC
TCTCTGAAGTCGTTGAATCTGTCAATCTCTTAATTGAAGCTAATCAAAAACTTTTGGCTC
TCATTAAACAAACTAAAGATTTCAATTCTGAACATTCACTCGCAACTTTCCTCAATCAAT
CTGTAATTCCACAAATGAATGAAGTTCGTAAATTTTCTGATCATTTAGAANGTATTGTTG
AAGATAAATTCTTGGCCAGTTCCAAAA
Length of connected seq. 1277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -