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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFG795
Library AF
(Link to library)
Clone ID AFG795
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16518-1
Original site URL
Representative seq. ID AFG795P
(Link to Original site)
Representative DNA sequence 
>AFG795 (AFG795Q) /CSM/AF/AFG7-D/AFG795Q.Seq.d/
ACATTATCCACCAACAATAATATAATAATAATATTAAGTGGTTGTGTTCTAAATCTTTAA
TAAATTCAATTATTCATATATATATACATATACACTATTATAATTCTAATTTTATTAATA
TTTTAATCTCTTTCATTTTTTTAAATTTTATTTTTTAAATTCTATTTTTCATTTTTTTTC
TATAAATTTTTTATTTTTAAAACTTTTTATTTTATTTCCAAAAAAAAAAXXXXXXXXXXG
TTTTTACAATCACATTTAATTGAATNCTNTGATATCATTTCGCACCAAATGAANCAATTG
TATCATTAAAAGATTCTGANAATTATCTTAAAACAATGAAATTAACTGGTACTAAATTTA
ATGATTCTCAAATTACTGTTNTTAATTATACAAGAAACANCCAGGCTTTGTTCCACCAAG
TTATTCAAATCAATCATCATCATCATCAGGTGATAATCAATCATTCCAACCACAATCAAC
TTCTAAAGTTAATCCATTTGGTAATGCTACTCCAATTGATACTTCTAAAGTTCATCTTTC
AAATTCTACTCAACCACAACAACCAACTCAACAACAACCACAACCAACCCAACAACAACA
GCAACAACAACAACCAACTCAACAAGGTCAACAAGGTCAACAACAACCACAACAACAAAA
TGATAATAAATACAGACCAAACTCAATGAGAACTAATAGTGGATTCAAACAAAATGACAA
TAAATTTGATAACAACAACAAATTTGATAACAAGAAACCGTTTGGACAAAATAAATACAA
CAACAAGAGAGAAGAAGATGGTTGGAAATCAACTGGTCCAGCAAGACATCCAAAAGATCA
ACCATCAAAAGAAGTATCACAACCAACTGTTGCCAAGACTTCTGGAAATATTTTCGAATG
TTTAG
sequence update 2001. 6. 2
Translated Amino Acid sequence 
hypptii***y*vvvf*ifnkfnysyiytytll*f*fy*YFNLFHFFKFYFLNSIFHFFS
INFLFLKLFILFPKKK---

---FLQSHLIEXXDIISHQMXQLYH*kilxiilkq*n*lvlnlmilkllxliiqetxrlc
stklfksiiiiir**siipttinf*s*siw*cysn*yf*sssfkfysttttnstttttnp
tttattttnstrstrsttttttk***iqtklnen**wiqtk*q*i**qqqi**qetvwtk
*iqqqerrrwleinwssktskrstikrsittnccqdfwkyfrmf
Translated Amino Acid sequence (All Frames) 
Frame A:
tlstnnniiiilsgcvlnl**iqlfiyiyiytiiilillif*slsff*ilffkfyfsfff
ykffifktfyfiskkk---

---vftitfn*xl*yhfapnexivslkdsxnylktmkltgtkfndsqitvxnytrnxqal
fhqviqinhhhhqviinhsnhnqllklihlvmllqlillkfifqillnhnnqlnnnhnqp
nnnsnnnnqlnkvnkvnnnhnnkmiintdqtq*elivdsnkmtinlitttnlitrnrldk
intttrekkmvgnqlvqqdiqkinhqkkyhnqllprlleifsnv*

Frame B:
hypptii***y*vvvf*ifnkfnysyiytytll*f*fy*YFNLFHFFKFYFLNSIFHFFS
INFLFLKLFILFPKKK---

---FLQSHLIEXXDIISHQMXQLYH*kilxiilkq*n*lvlnlmilkllxliiqetxrlc
stklfksiiiiir**siipttinf*s*siw*cysn*yf*sssfkfysttttnstttttnp
tttattttnstrstrsttttttk***iqtklnen**wiqtk*q*i**qqqi**qetvwtk
*iqqqerrrwleinwssktskrstikrsittnccqdfwkyfrmf

Frame C:
iihqq*ynnnikwlcskslinsiihiyihihyynsnfinilisfiflnfif*ilffiffl
*ifyf*nflfyfqkk---

---fynhi*lnxxisfrtk*xnciikrf*xls*nneinwy*i**fsnycx*lykkxpgfv
ppsysnqsssssgdnqsfqpqstskvnpfgnatpidtskvhlsnstqpqqptqqqpqptq
qqqqqqqptqqgqqgqqqpqqqndnkyrpnsmrtnsgfkqndnkfdnnnkfdnkkpfgqn
kynnkreedgwkstgparhpkdqpskevsqptvaktsgnifecl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFG795 (AFG795Q) /CSM/AF/AFG7-D/AFG795Q.Seq.d/                        490   e-137
VFI629 (VFI629Q) /CSM/VF/VFI6-B/VFI629Q.Seq.d/                        482   e-135
VFH676 (VFH676Q) /CSM/VF/VFH6-D/VFH676Q.Seq.d/                        482   e-135
SLC443 (SLC443Q) /CSM/SL/SLC4-B/SLC443Q.Seq.d/                        482   e-135
AFI776 (AFI776Q) /CSM/AF/AFI7-D/AFI776Q.Seq.d/                        482   e-135
AFH480 (AFH480Q) /CSM/AF/AFH4-D/AFH480Q.Seq.d/                        482   e-135
AFE677 (AFE677Q) /CSM/AF/AFE6-D/AFE677Q.Seq.d/                        482   e-135
AFC880 (AFC880Q) /CSM/AF/AFC8-D/AFC880Q.Seq.d/                        482   e-135
AFK402 (AFK402Q) /CSM/AF/AFK4-A/AFK402Q.Seq.d/                        476   e-133
SLH467 (SLH467Q) /CSM/SL/SLH4-C/SLH467Q.Seq.d/                        474   e-132
own update 2001.11.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CR318669|CR318669.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50   6e-05  8
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    38   2e-04  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   8e-04  16
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   0.003  12
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    34   0.005  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.007  15
BX004983|BX004983.8 Zebrafish DNA sequence from clone DKEY-7F3.    40   0.009  8
AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.    36   0.011  4
AC116924|AC116924.3 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    34   0.011  8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   0.018  10
dna update 2004. 3.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 753,610,080
protein update 2009. 4.21
PSORT 

 psg: 0.93  gvh: 0.40  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.11  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for AFG795 is nuc
5' end seq. ID AFG795F
5' end seq. 
>AFG795F.Seq
ACATTATCCACCAACAATAATATAATAATAATATTAAGTGGTTGTGTTCTAAATCTTTAA
TAAATTCAATTATTCATATATATATACATATACACTATTATAATTCTAATTTTATTAATA
TTTTAATCTCTTTCATTTTTTTAAATTTTATTTTTTAAATTCTATTTTTCATTTTTTTTC
TATAAATTTTTTATTTTTAAAACTTTTTATTTTATTTCCAAAAAAAAAA----------
Length of 5' end seq. 229
3' end seq. ID AFG795Z
3' end seq. 
>AFG795Z.Seq
----------GTTTTTACAATCACATTTAATTGAATNCTNTGATATCATTTCGCACCAAA
TGAANCAATTGTATCATTAAAAGATTCTGANAATTATCTTAAAACAATGAAATTAACTGG
TACTAAATTTAATGATTCTCAAATTACTGTTNTTAATTATACAAGAAACANCCAGGCTTT
GTTCCACCAAGTTATTCAAATCAATCATCATCATCATCAGGTGATAATCAATCATTCCAA
CCACAATCAACTTCTAAAGTTAATCCATTTGGTAATGCTACTCCAATTGATACTTCTAAA
GTTCATCTTTCAAATTCTACTCAACCACAACAACCAACTCAACAACAACCACAACCAACC
CAACAACAACAGCAACAACAACAACCAACTCAACAAGGTCAACAAGGTCAACAACAACCA
CAACAACAAAATGATAATAAATACAGACCAAACTCAATGAGAACTAATAGTGGATTCAAA
CAAAATGACAATAAATTTGATAACAACAACAAATTTGATAACAAGAAACCGTTTGGACAA
AATAAATACAACAACAAGAGAGAAGAAGATGGTTGGAAATCAACTGGTCCAGCAAGACAT
CCAAAAGATCAACCATCAAAAGAAGTATCACAACCAACTGTTGCCAAGACTTCTGGAAAT
ATTTTCGAATGTTTAG
Length of 3' end seq. 666
Connected seq. ID AFG795P
Connected seq. 
>AFG795P.Seq
ACATTATCCACCAACAATAATATAATAATAATATTAAGTGGTTGTGTTCTAAATCTTTAA
TAAATTCAATTATTCATATATATATACATATACACTATTATAATTCTAATTTTATTAATA
TTTTAATCTCTTTCATTTTTTTAAATTTTATTTTTTAAATTCTATTTTTCATTTTTTTTC
TATAAATTTTTTATTTTTAAAACTTTTTATTTTATTTCCAAAAAAAAAA----------G
TTTTTACAATCACATTTAATTGAATNCTNTGATATCATTTCGCACCAAATGAANCAATTG
TATCATTAAAAGATTCTGANAATTATCTTAAAACAATGAAATTAACTGGTACTAAATTTA
ATGATTCTCAAATTACTGTTNTTAATTATACAAGAAACANCCAGGCTTTGTTCCACCAAG
TTATTCAAATCAATCATCATCATCATCAGGTGATAATCAATCATTCCAACCACAATCAAC
TTCTAAAGTTAATCCATTTGGTAATGCTACTCCAATTGATACTTCTAAAGTTCATCTTTC
AAATTCTACTCAACCACAACAACCAACTCAACAACAACCACAACCAACCCAACAACAACA
GCAACAACAACAACCAACTCAACAAGGTCAACAAGGTCAACAACAACCACAACAACAAAA
TGATAATAAATACAGACCAAACTCAATGAGAACTAATAGTGGATTCAAACAAAATGACAA
TAAATTTGATAACAACAACAAATTTGATAACAAGAAACCGTTTGGACAAAATAAATACAA
CAACAAGAGAGAAGAAGATGGTTGGAAATCAACTGGTCCAGCAAGACATCCAAAAGATCA
ACCATCAAAAGAAGTATCACAACCAACTGTTGCCAAGACTTCTGGAAATATTTTCGAATG
TTTAG
Length of connected seq. 895
Full length Seq ID -
Full length Seq. -
Length of full length seq. -