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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN260
Library CH
(Link to library)
Clone ID CHN260
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHN260 (CHN260Q) /CSM/CH/CHN2-C/CHN260Q.Seq.d/
XXXXXXXXXXGCAAATAGGNGGCNGTTGCAANTGNAGCAAATAGTGGTGCNGCANNNGGT
GCAAANAGTGGAAACAATGNCGCTGTATCTGGTGNTGCAAATGGAAATAATGGCGCTGCA
GCTGGANCAAATAGTGGTGCCGCAATTGNTGCAAATAGTGGTGCNGCAANTGCTGCNAAT
AGTGGTGCCGCAACTGNTGCAAATAGAGGAAACAATGNCGTTGCAACTGGTGCTGCNAAT
GGNAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCANNTGNTGCAAATAGTGGT
GCTGCANATAGTGGTGCTGCAACTGCNGCAAATAGTGGTNCTGCAGCTGGAGCAAATAGT
GGTGCTGCAACTGCTGCAAATAGTGGCGCTGCANCTGCTGCAAGTGGTGGAAATGGTGCA
AGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTA
TNGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCT
NCANGG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---k*XAVAXXANSGAAXGAXSGNNXAVSGXANGNNGAAAGXNSGAAIXANSGAAXAANS
GAATXANRGNNXVATGAANGNNGAAAGANSGAAXXANSGAAXSGAATAANSGXAAGANSG
AATAANSGAAXAASGGNGASGAANPGSIVTPNDQNVSPLXNSDAAATAASTTGRNPRNPX
X
Translated Amino Acid sequence (All Frames) 
Frame A:
---qiggxcxxsk*wcxxxckxwkqxrciwxckwk*wrcswxk*wcrnxck*wcxxccx*
wcrnxck*rkqxrcnwccxwx*wrcswsk*wcrxxck*wccx*wccncxk*wxcswsk*w
ccncck*wrcxcckwwkwckwcckpwfnsnsk*skcfsixel*ccsnrsinyrqkpkksx
x


Frame B:
---k*XAVAXXANSGAAXGAXSGNNXAVSGXANGNNGAAAGXNSGAAIXANSGAAXAANS
GAATXANRGNNXVATGAANGNNGAAAGANSGAAXXANSGAAXSGAATAANSGXAAGANSG
AATAANSGAAXAASGGNGASGAANPGSIVTPNDQNVSPLXNSDAAATAASTTGRNPRNPX
X


Frame C:
---nrxxlqxxqivvxxxvqxvetmxlylvxqmeimalqlxqivvpqlxqivvxqxlxiv
vpqlxqieetmxlqlvlxmximalqleqivvpxxxqivvlxivvlqlxqivvlqleqivv
lqllqivalxllqvvemvqvvlqtlvq**lqmikmflhyxtlmlqqpqhqlqaetqeilx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN260 (CHN260Q) /CSM/CH/CHN2-C/CHN260Q.Seq.d/                        884   0.0
SHC421 (SHC421Q) /CSM/SH/SHC4-A/SHC421Q.Seq.d/                        841   0.0
SSD263 (SSD263Q) /CSM/SS/SSD2-C/SSD263Q.Seq.d/                        839   0.0
SLH856 (SLH856Q) /CSM/SL/SLH8-C/SLH856Q.Seq.d/                        839   0.0
SHL166 (SHL166Q) /CSM/SH/SHL1-C/SHL166Q.Seq.d/                        839   0.0
SHL133 (SHL133Q) /CSM/SH/SHL1-B/SHL133Q.Seq.d/                        839   0.0
SHK429 (SHK429Q) /CSM/SH/SHK4-B/SHK429Q.Seq.d/                        839   0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/                        839   0.0
SHG352 (SHG352Q) /CSM/SH/SHG3-C/SHG352Q.Seq.d/                        839   0.0
SHB246 (SHB246Q) /CSM/SH/SHB2-B/SHB246Q.Seq.d/                        839   0.0
own update 2004. 5. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CA972875|CA972875.1 AGENCOURT_10764708 Wellcome CRC pSK egg Xenopus laevis cDNA cloneIMAGE:6324829 5', mRNA sequence.    46   0.70   1
BC082626|BC082626.1 Xenopus laevis hypothetical LOC494656, mRNA (cDNA clone MGC:80488 IMAGE:5156662), complete cds.    46   0.70   1
AC006539|AC006539.1 Homo sapiens chromosome 19, BAC 39498 (CIT-B-26L23), complete sequence.    46   0.70   1
AC156012|AC156012.12 Medicago truncatula clone mth2-168l11, WORKING DRAFT SEQUENCE, 4 ordered pieces.    44   2.8    1
BJ576741|BJ576741.1 Ipomoea nil cDNA clone:jm40p11, 3' end, single read.    44   2.8    1
AC139748|AC139748.10 Medicago truncatula clone mth2-15o24, complete sequence.    44   2.8    1
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           32   4.3    2
CV641042|CV641042.1 EST919795 Field isolate cDNA library Plasmodium vivax cDNA clone PVMDY45 5' end, mRNA sequence.    42   11     1
BG506138|BG506138.1 601860074F1 NIH_MGC_61 Homo sapiens cDNA clone IMAGE:4072291 5', mRNA sequence.    42   11     1
AL845159|AL845159.4 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-263O22.    42   11     1
dna update 2005. 7. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    54   3e-06
protein update 2009. 1. 3
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.52  top: 0.53  tms: 0.00  mit: -0.02  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHN260 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHN260Z
3' end seq. 
>CHN260Z.Seq
NNNNNNNNNNGCAAATAGGNGGCNGTTGCAANTGNAGCAAATAGTGGTGCNGCANNNGGT
GCAAANAGTGGAAACAATGNCGCTGTATCTGGTGNTGCAAATGGAAATAATGGCGCTGCA
GCTGGANCAAATAGTGGTGCCGCAATTGNTGCAAATAGTGGTGCNGCAANTGCTGCNAAT
AGTGGTGCCGCAACTGNTGCAAATAGAGGAAACAATGNCGTTGCAACTGGTGCTGCNAAT
GGNAATAATGGCGCTGCAGCTGGAGCAAATAGTGGTGCCGCANNTGNTGCAAATAGTGGT
GCTGCANATAGTGGTGCTGCAACTGCNGCAAATAGTGGTNCTGCAGCTGGAGCAAATAGT
GGTGCTGCAACTGCTGCAAATAGTGGCGCTGCANCTGCTGCAAGTGGTGGAAATGGTGCA
AGTGGTGCTGCAAACCCTGGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTA
TNGAACTCTGATGCTGCAGCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCT
NCANGG
Length of 3' end seq. 546
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -