CHN258
Library CH
(Link to library)
Clone ID CHN258
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16417-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHN258 (CHN258Q) /CSM/CH/CHN2-C/CHN258Q.Seq.d/
XXXXXXXXXXGCTGCAACTGGAGCCAAATAGTGGGTGNTGCAACTNGGAGCCAAATAGTG
GCGCTTGCAAGTGGAAGCAAATAGTGGGTGCTGCAACNTGGTGCAAATAGTGGAAACAAT
GCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGT
GCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCT
GCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTGCA
GCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGCT
GCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGCA
AATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCT
GGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCA
GCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAACG
GTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAA
sequence update 2002. 9.10
Translated Amino Acid sequence
---cnwsqivgxatxsqivalasgsk*WVLQXGANSGNNAAVTGAANGNNGAAAGANSGA
ATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAA
TAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAA
TAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGE


Translated Amino Acid sequence (All Frames)
Frame A:
---lqlepnsgxcnxepnsgackwkqivgaatwck*wkqcrcnwcckwk*wrcswsk*wc
rncck*wcrncck*wcrncck*rkqcrcnwcckwk*wrcswsk*wcrncck*wcck*wcc
ncck*wccswsk*wccncck*wrcncckwwkwckwcckpwfnsnsk*skcfsiiel*ccs
nrsinyrqkpkksnk*ssnghtnanlfs*rtscwwr


Frame B:
---cnwsqivgxatxsqivalasgsk*WVLQXGANSGNNAAVTGAANGNNGAAAGANSGA
ATAANSGAATAANSGAATAANRGNNAAATGAANGNNGAAAGANSGAATAANSGAANSGAA
TAANSGAAAGANSGAATAANSGAATAASGGNGASGAANPGSIVTPNDQNVSPLSNSDAAA
TAASTTGRNPRNPTSRAPTVTPTPTSSAEEPAAGGE


Frame C:
---atgak*wvxqlgak*wrlqveansgccnxvqivetmpl*lvlqmeimalqleqivvp
qllqivvpqllqivvpqllqieetmplqlvlqmeimalqleqivvpqllqivvlqivvlq
llqivvlqleqivvlqllqivalqllqvvemvqvvlqtlvq**lqmikmflhyrtlmlqq
pqhqlqaetqeiqqvelqrshqrqplqlknqllva


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHN258 (CHN258Q) /CSM/CH/CHN2-C/CHN258Q.Seq.d/ 1253 0.0
CHR187 (CHR187Q) /CSM/CH/CHR1-D/CHR187Q.Seq.d/ 1138 0.0
SHK723 (SHK723Q) /CSM/SH/SHK7-A/SHK723Q.Seq.d/ 1136 0.0
SHB145 (SHB145Q) /CSM/SH/SHB1-B/SHB145Q.Seq.d/ 1132 0.0
SHK112 (SHK112Q) /CSM/SH/SHK1-A/SHK112Q.Seq.d/ 1130 0.0
SHA456 (SHA456Q) /CSM/SH/SHA4-C/SHA456Q.Seq.d/ 1130 0.0
SHA440 (SHA440Q) /CSM/SH/SHA4-B/SHA440Q.Seq.d/ 1130 0.0
AHK645 (AHK645Q) /CSM/AH/AHK6-B/AHK645Q.Seq.d/ 1130 0.0
CHI407 (CHI407Q) /CSM/CH/CHI4-A/CHI407Q.Seq.d/ 1128 0.0
AHL869 (AHL869Q) /CSM/AH/AHL8-C/AHL869Q.Seq.d/ 1124 0.0

own update 2003. 5.22
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CK783714|CK783714.1 UI-D-GC1-aau-c-07-0-UI.s1 UI-D-GC1 Alexandrium tamarense cDNA clone UI-D-GC1-aau-c-07-0-UI 3', mRNA sequence. 30 0.003 3
AC141063|AC141063.1 Homo sapiens chromosome 16 clone RP11-1256C5, WORKING DRAFT SEQUENCE, 11 unordered pieces. 30 0.007 3
DN850536|DN850536.1 4146047 BARC_3GAL chicken mixed tissue Gallus gallus cDNA clone 3GAL_47D10 5', mRNA sequence. 36 0.022 3
AC141261|AC141261.1 Homo sapiens chromosome 16 clone RP11-1335J10, WORKING DRAFT SEQUENCE, 4 unordered pieces. 28 0.025 3
DQ013872|DQ013872.1 Ophiostoma novo-ulmi isolate V1 mating type 3' flanking region genomic sequence. 34 0.16 2
BJ576741|BJ576741.1 Ipomoea nil cDNA clone:jm40p11, 3' end, single read. 48 0.21 1
AE003498|AE003498.5 Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence. 36 0.43 2
AC018488|AC018488.7 Drosophila melanogaster, chromosome X, region 13A-13B, BAC clone BACR09F03, complete sequence. 36 0.45 2
AC015420|AC015420.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces. 36 0.49 2
AQ749675|AQ749675.1 HS_5576_A1_D08_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=1152 Col=15 Row=G, DNA sequence. 46 0.84 1
dna update 2005. 7. 1
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB... 53 9e-06
U87912_1(U87912|pid:none) Dictyostelium discoideum MAP kinase ki... 37 0.48
CP000471_2084(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 35 2.4
S68824(S68824)rngB protein, cytosolic - slime mold (Dictyosteliu... 34 4.1
(Q7M3S9) RecName: Full=RING finger protein B; Short=Pro... 34 4.1
AC116979_82(AC116979|pid:none) Dictyostelium discoideum chromoso... 33 5.3
AY428796_1(AY428796|pid:none) Dictyostelium discoideum DIF insen... 33 6.9
(Q6CPW4) RecName: Full=Transcription activator MSS11; &CR382125... 33 6.9
AC116956_6(AC116956|pid:none) Dictyostelium discoideum chromosom... 33 6.9
AE017342_35(AE017342|pid:none) Cryptococcus neoformans var. neof... 33 9.1
protein update 2009. 5.20
PSORT

psg: 0.82 gvh: 0.45 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.09 mip: 0.10
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHN258 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHN258Z
3' end seq.
>CHN258Z.Seq
NNNNNNNNNNGCTGCAACTGGAGCCAAATAGTGGGTGNTGCAACTNGGAGCCAAATAGTG
GCGCTTGCAAGTGGAAGCAAATAGTGGGTGCTGCAACNTGGTGCAAATAGTGGAAACAAT
GCCGCTGTAACTGGTGCTGCAAATGGAAATAATGGCGCTGCAGCTGGAGCAAATAGTGGT
GCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCCGCAACTGCT
GCAAATAGAGGAAACAATGCCGCTGCAACTGGTGCTGCAAATGGAAATAATGGCGCTGCA
GCTGGAGCAAATAGTGGTGCCGCAACTGCTGCAAATAGTGGTGCTGCAAATAGTGGTGCT
GCAACTGCTGCAAATAGTGGTGCTGCAGCTGGAGCAAATAGTGGTGCTGCAACTGCTGCA
AATAGTGGCGCTGCAACTGCTGCAAGTGGTGGAAATGGTGCAAGTGGTGCTGCAAACCCT
GGTTCAATAGTAACTCCAAATGATCAAAATGTTTCTCCATTATCGAACTCTGATGCTGCA
GCAACCGCAGCATCAACTACAGGCAGAAACCCAAGAAATCCAACAAGTAGAGCTCCAACG
GTCACACCAACGCCAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAA
Length of 3' end seq. 651
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -