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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN214
Library CH
(Link to library)
Clone ID CHN214
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11252-1
Original site URL
Representative seq. ID CHN214P
(Link to Original site)
Representative DNA sequence 
>CHN214 (CHN214Q) /CSM/CH/CHN2-A/CHN214Q.Seq.d/
AAAATATTTTAATTATTATTTTTTTTTAATTCACAACTGCACAACCAAATAATTGAAAAA
TATATACACATATAAATAATATAAAACATATATATTAATTTCAATTTTAGTTCAATAATA
ACAACAACAAAAAAAAAAXXXXXXXXXXGGTTGTAAATTCACCACTTTGGGACACTGTAA
AAGTTTTATCGTTGGGAAATTCAACCAATTGGTAGACCCCTAAATCTTTACAAATCATTT
GTATTATTAACACGTTGGGATGAAGAAAATGGCTTACCTACCAAATTTCAAAAGGTAAAC
TCTCTCTCAAACAAAGACTTTTGGGCAAATGAAGCAAAATCTTTAAAATCCCAAAGTAAA
ATCTCCTCTTACTTGTATTGCTCACCAATGTTTGATACTGATTTCACTTTTAATTATTCA
ATTGACTCTGAAAAATATCCAGTTGATTTCTTACCAAATAGTCCAATACTATCAAGTAGA
AGACATCATAATCATCATCACCACAGTAATAGTGATGGTGGTTTTGATCATCAACAACAA
CAACAACAAAACCATCACTCACCAAAACAATATCTTCATCCTTTAACTAGTTTAAATCGT
AACAACAAATTATCAGATTCTCAATTGTTACCATCAATCAAAACACCAACTTTATCAGTT
GGTGGTATAGTACCTCAAAGAAGATCAAGTCATCCTTCTCTTTTATTATCCTCACATATT
TACTCTCATTCAATCACTTTGGGATTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
kif*llfffnsqlhnqiiekyihi*ii*NIYINFNFSSIITTTKKK---

---GCKFTTLGHCKSFIVGKFNQLVDP*iftnhlyy*hvgmkkmaylpnfkr*tlsqtkt
fgqmkqnl*npkvkspltciahqclilislliiqltlkniqlisyqivqyyqvediiiii
ttvivmvvliinnnnnktithqnnifil*lv*ivttnyqilncyhqskhqlyqlvv*ylk
edqvillfyyphiftliqslwdl
Translated Amino Acid sequence (All Frames) 
Frame A:
kif*llfffnsqlhnqiiekyihi*ii*NIYINFNFSSIITTTKKK---

---GCKFTTLGHCKSFIVGKFNQLVDP*iftnhlyy*hvgmkkmaylpnfkr*tlsqtkt
fgqmkqnl*npkvkspltciahqclilislliiqltlkniqlisyqivqyyqvediiiii
ttvivmvvliinnnnnktithqnnifil*lv*ivttnyqilncyhqskhqlyqlvv*ylk
edqvillfyyphiftliqslwdl

Frame B:
kyfnyyfflihncttk*lkniytyk*yktyilisilvq**qqqkk---

---vvnsplwdtvkvlslgnstnw*tpkslqiiciintlg*rkwltyqiskgklslkqrl
lgk*skifkipk*nllllvlltnv*y*fhf*lfn*l*kiss*fltk*sntik*kts*sss
pq***wwf*sstttttkpsltktisssfn*fks*qqiirfsivtinqntnfiswwystsk
kikssfsfiiltyllsfnhfgi*

Frame C:
niliiiff*fttaqpnn*kiythinnikhiy*fqf*fnnnnnkkk---

---l*ihhfgtl*kfyrweiqpigrplnlyksfvlltrwdeenglptkfqkvnslsnkdf
waneakslksqskissylycspmfdtdftfnysidsekypvdflpnspilssrrhhnhhh
hsnsdggfdhqqqqqqnhhspkqylhpltslnrnnklsdsqllpsiktptlsvggivpqr
rsshpslllsshiyshsitlgfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN214 (CHN214Q) /CSM/CH/CHN2-A/CHN214Q.Seq.d/                        759   0.0
SSJ543 (SSJ543Q) /CSM/SS/SSJ5-B/SSJ543Q.Seq.d/                        728   0.0
SHL642 (SHL642Q) /CSM/SH/SHL6-B/SHL642Q.Seq.d/                        728   0.0
SHL452 (SHL452Q) /CSM/SH/SHL4-C/SHL452Q.Seq.d/                        728   0.0
SHC841 (SHC841Q) /CSM/SH/SHC8-B/SHC841Q.Seq.d/                        728   0.0
CHP517 (CHP517Q) /CSM/CH/CHP5-A/CHP517Q.Seq.d/                        728   0.0
CHE620 (CHE620Q) /CSM/CH/CHE6-A/CHE620Q.Seq.d/                        728   0.0
AHC870 (AHC870Q) /CSM/AH/AHC8-C/AHC870Q.Seq.d/                        728   0.0
CHL143 (CHL143Q) /CSM/CH/CHL1-B/CHL143Q.Seq.d/                        720   0.0
CHJ370 (CHJ370Q) /CSM/CH/CHJ3-C/CHJ370Q.Seq.d/                        682   0.0
own update 2002.10. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.   688   0.0    6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-05  14
AC010577|AC010577.5 Drosophila melanogaster clone BACR22J20, complete sequence.    38   3e-04  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42   0.001  13
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    38   0.005  8
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    34   0.005  8
AE003846|AE003846.5 Drosophila melanogaster chromosome 4, section 5 of 5 of the complete sequence.    38   0.016  9
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32   0.024  12
BX548036|BX548036.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-217H14.    34   0.026  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32   0.046  12
dna update 2005. 6.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 916,555,357
protein update 2009. 4. 9
PSORT 

 psg: 0.91  gvh: 0.37  alm: 0.53  top: 0.83  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHN214 is mit
5' end seq. ID CHN214F
5' end seq. 
>CHN214F.Seq
AAAATATTTTAATTATTATTTTTTTTTAATTCACAACTGCACAACCAAATAATTGAAAAA
TATATACACATATAAATAATATAAAACATATATATTAATTTCAATTTTAGTTCAATAATA
ACAACAACAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 148
3' end seq. ID CHN214Z
3' end seq. 
>CHN214Z.Seq
NNNNNNNNNNGGTTGTAAATTCACCACTTTGGGACACTGTAAAAGTTTTATCGTTGGGAA
ATTCAACCAATTGGTAGACCCCTAAATCTTTACAAATCATTTGTATTATTAACACGTTGG
GATGAAGAAAATGGCTTACCTACCAAATTTCAAAAGGTAAACTCTCTCTCAAACAAAGAC
TTTTGGGCAAATGAAGCAAAATCTTTAAAATCCCAAAGTAAAATCTCCTCTTACTTGTAT
TGCTCACCAATGTTTGATACTGATTTCACTTTTAATTATTCAATTGACTCTGAAAAATAT
CCAGTTGATTTCTTACCAAATAGTCCAATACTATCAAGTAGAAGACATCATAATCATCAT
CACCACAGTAATAGTGATGGTGGTTTTGATCATCAACAACAACAACAACAAAACCATCAC
TCACCAAAACAATATCTTCATCCTTTAACTAGTTTAAATCGTAACAACAAATTATCAGAT
TCTCAATTGTTACCATCAATCAAAACACCAACTTTATCAGTTGGTGGTATAGTACCTCAA
AGAAGATCAAGTCATCCTTCTCTTTTATTATCCTCACATATTTACTCTCATTCAATCACT
TTGGGATTTAAA
Length of 3' end seq. 612
Connected seq. ID CHN214P
Connected seq. 
>CHN214P.Seq
AAAATATTTTAATTATTATTTTTTTTTAATTCACAACTGCACAACCAAATAATTGAAAAA
TATATACACATATAAATAATATAAAACATATATATTAATTTCAATTTTAGTTCAATAATA
ACAACAACAAAAAAAAAA----------GGTTGTAAATTCACCACTTTGGGACACTGTAA
AAGTTTTATCGTTGGGAAATTCAACCAATTGGTAGACCCCTAAATCTTTACAAATCATTT
GTATTATTAACACGTTGGGATGAAGAAAATGGCTTACCTACCAAATTTCAAAAGGTAAAC
TCTCTCTCAAACAAAGACTTTTGGGCAAATGAAGCAAAATCTTTAAAATCCCAAAGTAAA
ATCTCCTCTTACTTGTATTGCTCACCAATGTTTGATACTGATTTCACTTTTAATTATTCA
ATTGACTCTGAAAAATATCCAGTTGATTTCTTACCAAATAGTCCAATACTATCAAGTAGA
AGACATCATAATCATCATCACCACAGTAATAGTGATGGTGGTTTTGATCATCAACAACAA
CAACAACAAAACCATCACTCACCAAAACAATATCTTCATCCTTTAACTAGTTTAAATCGT
AACAACAAATTATCAGATTCTCAATTGTTACCATCAATCAAAACACCAACTTTATCAGTT
GGTGGTATAGTACCTCAAAGAAGATCAAGTCATCCTTCTCTTTTATTATCCTCACATATT
TACTCTCATTCAATCACTTTGGGATTTAAA
Length of connected seq. 740
Full length Seq ID -
Full length Seq. -
Length of full length seq. -