>CHN208 (CHN208Q) /CSM/CH/CHN2-A/CHN208Q.Seq.d/
TTGGCCTACTGGAAAAAAAGAATCTTTTTTTTTTTATAATTATAAAAATTACTTTTAAAA
AATATCCAATAGTAGTNCGAAAATATANCATTNCNTTATNTAATTCCAAAAATAAAATAA
ATAAAAATNGTAAANCCNAAAAAAAAAXXXXXXXXXX

GLLEKKNLFFFIIIKITFKKYPIVVRKYXIXLXNSKNKINKNXKXXKK---

Frame A:
laywkkrifffl*l*klllkniq**xenixxxyxipkik*ikxvxpkk---


Frame B:
wptgkkesfffynyknyf*kisnssxkixhxxx*fqk*nk*kx*xxkk---


Frame C:
GLLEKKNLFFFIIIKITFKKYPIVVRKYXIXLXNSKNKINKNXKXXKK---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN208 (CHN208Q) /CSM/CH/CHN2-A/CHN208Q.Seq.d/                        117   5e-26
CHS194 (CHS194Q) /CSM/CH/CHS1-D/CHS194Q.Seq.d/                        109   1e-23
CHQ780 (CHQ780Q) /CSM/CH/CHQ7-D/CHQ780Q.Seq.d/                        109   1e-23
CHQ525 (CHQ525Q) /CSM/CH/CHQ5-B/CHQ525Q.Seq.d/                        109   1e-23
CHP787 (CHP787Q) /CSM/CH/CHP7-D/CHP787Q.Seq.d/                        109   1e-23
CHP722 (CHP722Q) /CSM/CH/CHP7-A/CHP722Q.Seq.d/                        109   1e-23
CHL639 (CHL639Q) /CSM/CH/CHL6-B/CHL639Q.Seq.d/                        109   1e-23
CHK617 (CHK617Q) /CSM/CH/CHK6-A/CHK617Q.Seq.d/                        109   1e-23
CHJ365 (CHJ365Q) /CSM/CH/CHJ3-C/CHJ365Q.Seq.d/                        109   1e-23
CHI812 (CHI812Q) /CSM/CH/CHI8-A/CHI812Q.Seq.d/                        109   1e-23

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC149612|AC149612.1 Ictalurus punctatus clone CH212-98M5, WORKING DRAFT SEQUENCE, 10 unordered pieces.    38   0.059  3
AC149544|AC149544.1 Populus balsamifera subsp. trichocarpa clone Pop1-69J1, complete sequence.    34   0.062  6
BZ065539|BZ065539.1 lkx92f10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    30   0.092  3
AC149736|AC149736.2 Bos taurus clone CH240-110G21, WORKING DRAFT SEQUENCE, 33 unordered pieces.    38   0.16   3
AX926713|AX926713.1 Sequence 3 from Patent WO03084989.             46   0.18   1
AE017202|AE017202.1 Lactobacillus johnsonii NCC 533, section 3 of 7 of the complete genome.    46   0.18   1
AC118895|AC118895.8 Rattus norvegicus clone CH230-505F11, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    46   0.18   1
Z81550|Z81550.1 Caenorhabditis elegans cosmid F55F3.               38   0.20   3
Z81493|Z81493.1 Caenorhabditis elegans cosmid F01D5.               36   0.22   2
AC113390|AC113390.3 Homo sapiens chromosome 5 clone RP11-360C3, complete sequence.    42   0.23   3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 86,544,074

 psg: 0.95  gvh: 0.35  alm: 0.36  top: 0.73  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CHN208 is cyt

>CHN208F.Seq
TTGGCCTACTGGAAAAAAAGAATCTTTTTTTTTTTATAATTATAAAAATTACTTTTAAAA
AATATCCAATAGTAGTNCGAAAATATANCATTNCNTTATNTAATTCCAAAAATAAAATAA
ATAAAAATNGTAAANCCNAAAAAAAAANNNNNNNNNN