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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN192
Library CH
(Link to library)
Clone ID CHN192
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11403-1
Original site URL
Representative seq. ID CHN192P
(Link to Original site)
Representative DNA sequence 
>CHN192 (CHN192Q) /CSM/CH/CHN1-D/CHN192Q.Seq.d/
ACTGTTGGCCTACTGGNATATTTTACCACACCCGAAAACATATAATTTTATTATATTTTT
TGTTTTTTTTTTTCTTCAAATAAATTNCNTTANCAAAAATAAAATAAAATAAAAAAAAAA
XXXXXXXXXXAATGTTTATGCACTTCAAAAGTATGCCAAAGGATTGGGTAGATATTTCAT
TTATGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCC
AACCGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGC
AACCGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTT
AGGTCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTC
TTTGGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAAT
TGATCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAA
CTTAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGGT
GAAGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGCA
AAGAAATCAAAATCTTCTGCTCCACACAGTTTCAAGC
sequence update 2002.10.25
Translated Amino Acid sequence 
tvgllxyfttpeni*fyyifcfffssnkxxxqk*NKIKKK---

---NVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIPEA
TVIIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNAFFYSLVSKDTQEMYYSTKRQQFLI
DQGYSFKVISELPGIDQEVNLNILQNKINSIYWLKYWVKVKIVVKMKF*kkismillvvq
rnqnlllhtvss
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxyfttpeni*fyyifcfffssnkxxxqk*NKIKKK---

---NVYALQKYAKGLGRYFIYGPTSGHERMSILSKFQHDPTVRTIFISKVGDTSIDIPEA
TVIIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNAFFYSLVSKDTQEMYYSTKRQQFLI
DQGYSFKVISELPGIDQEVNLNILQNKINSIYWLKYWVKVKIVVKMKF*kkismillvvq
rnqnlllhtvss

Frame B:
llaywxilphpktynfiiffvffflqinxxxknkik*kk---

---mfmhfksmpkdwvdisfmdqhqamke*vfsrnfnmiqp*epfsfqrlviplsifqrq
plsfkfhhimvhvvkrhnv*vvffvqnqnlmvftmlsfilwfqkilkkcitvqrdnsf*l
ikvivlrsfqsylvlikk*t*iffktrstrsigssig*r*r*w*k*nfrrrfr*yyswck
eikifcstqfq

Frame C:
cwptgifyhtrkhiillyflfffffk*ixlxkik*nkkk---

---clctskvcqrig*ifhlwtnirp*kneysleist*snrknhfhfkgw*ylyrysrgn
ryhssfitlwftssrgttfrsysssktki*wslqcfllffgfkrysrnvlqykettvfn*
srl*f*ghfrvtwy*srsklkysskqdqldllaqvlgegedsgkneileedfdditrgak
kskssaphsfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN192 (CHN192Q) /CSM/CH/CHN1-D/CHN192Q.Seq.d/                       1124   0.0
VHI885 (VHI885Q) /CSM/VH/VHI8-D/VHI885Q.Seq.d/                       1092   0.0
VHC220 (VHC220Q) /CSM/VH/VHC2-A/VHC220Q.Seq.d/                       1092   0.0
CHS338 (CHS338Q) /CSM/CH/CHS3-B/CHS338Q.Seq.d/                       1092   0.0
CHQ732 (CHQ732Q) /CSM/CH/CHQ7-B/CHQ732Q.Seq.d/                       1092   0.0
CHQ432 (CHQ432Q) /CSM/CH/CHQ4-B/CHQ432Q.Seq.d/                       1092   0.0
CHM270 (CHM270Q) /CSM/CH/CHM2-C/CHM270Q.Seq.d/                       1092   0.0
CHL631 (CHL631Q) /CSM/CH/CHL6-B/CHL631Q.Seq.d/                       1092   0.0
CHL564 (CHL564Q) /CSM/CH/CHL5-C/CHL564Q.Seq.d/                       1092   0.0
CHG470 (CHG470Q) /CSM/CH/CHG4-C/CHG470Q.Seq.d/                       1092   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U77065|U77065.1 Dictyostelium discoideum DNA helicase homolog (repB) gene, complete cds.   825   0.0    2
CO095882|CO095882.1 GR__Ea18L20.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18L20 3', mRNA sequence.    80   1e-19  2
CO117140|CO117140.1 GR__Eb019M05.r GR__Eb Gossypium raimondii cDNA clone GR__Eb019M05 3', mRNA sequence.    80   1e-19  2
AW651084|AW651084.1 EST329538 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI15O10 5', mRNA sequence.    58   4e-12  2
BG124428|BG124428.1 EST470074 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF5O19 5' sequence, mRNA sequence.    58   4e-12  2
BM409622|BM409622.1 EST583949 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG49G24 5' end, mRNA sequence.    58   5e-12  2
DR181209|DR181209.1 RTMNUT1_37_B06.g2_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_37_B06_A029 5', mRNA sequence.    54   9e-12  4
CK073263|CK073263.1 65866rsicem_9703.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence.    78   2e-11  2
BJ952644|BJ952644.1 Physcomitrella patens subsp. patens cDNA clone:pphf17h22, 3' end.    44   4e-11  3
AI812930|AI812930.1 22F10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence.    54   2e-10  4
dna update 2005. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77065_1(U77065|pid:none) Dictyostelium discoideum DNA helicase ...   277   3e-92
CR382137_378(CR382137|pid:none) Debaryomyces hansenii strain CBS...   199   6e-50
FM992695_260(FM992695|pid:none) Candida dubliniensis CD36 chromo...   198   1e-49
(O13768) RecName: Full=Probable DNA repair helicase ercc3;      ...   195   9e-49
L01414_1(L01414|pid:none) Saccharomyces cerevisiae DNA helicase ...   195   1e-48
EF676215_1(EF676215|pid:none) Picea sitchensis clone WS0271_O13 ...   180   4e-48
AM270206_31(AM270206|pid:none) Aspergillus niger contig An09c017...   188   1e-46
AM920436_1609(AM920436|pid:none) Penicillium chrysogenum Wiscons...   187   2e-46
AP007162_442(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   187   2e-46
EF030553_1(EF030553|pid:none) Cricetulus griseus DNA helicase (E...   182   6e-45
protein update 2009. 4. 9
PSORT 

 psg: 0.63  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.05
 nuc: 0.06  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHN192 is cyt
5' end seq. ID CHN192F
5' end seq. 
>CHN192F.Seq
ACTGTTGGCCTACTGGNATATTTTACCACACCCGAAAACATATAATTTTATTATATTTTT
TGTTTTTTTTTTTCTTCAAATAAATTNCNTTANCAAAAATAAAATAAAATAAAAAAAAAA
NNNNNNNNNN
Length of 5' end seq. 130
3' end seq. ID CHN192Z
3' end seq. 
>CHN192Z.Seq
NNNNNNNNNNAATGTTTATGCACTTCAAAAGTATGCCAAAGGATTGGGTAGATATTTCAT
TTATGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCC
AACCGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGC
AACCGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTT
AGGTCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTC
TTTGGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAAT
TGATCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAA
CTTAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGGT
GAAGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGCA
AAGAAATCAAAATCTTCTGCTCCACACAGTTTCAAGC
Length of 3' end seq. 577
Connected seq. ID CHN192P
Connected seq. 
>CHN192P.Seq
ACTGTTGGCCTACTGGNATATTTTACCACACCCGAAAACATATAATTTTATTATATTTTT
TGTTTTTTTTTTTCTTCAAATAAATTNCNTTANCAAAAATAAAATAAAATAAAAAAAAAA
----------AATGTTTATGCACTTCAAAAGTATGCCAAAGGATTGGGTAGATATTTCAT
TTATGGACCAACATCAGGCCATGAAAGAATGAGTATTCTCTCGAAATTTCAACATGATCC
AACCGTAAGAACCATTTTCATTTCAAAGGTTGGTGATACCTCTATCGATATTCCAGAGGC
AACCGTTATCATTCAAGTTTCATCACATTATGGTTCACGTCGTCAAGAGGCACAACGTTT
AGGTCGTATTCTTCGTCCAAAACCAAAATCTGATGGTCTTTACAATGCTTTCTTTTATTC
TTTGGTTTCAAAAGATACTCAAGAAATGTATTACAGTACAAAGAGACAACAGTTTTTAAT
TGATCAAGGTTATAGTTTTAAGGTCATTTCAGAGTTACCTGGTATTGATCAAGAAGTAAA
CTTAAATATTCTTCAAAACAAGATCAACTCGATCTATTGGCTCAAGTATTGGGTGAAGGT
GAAGATAGTGGTAAAAATGAAATTTTAGAAGAAGATTTCGATGATATTACTCGTGGTGCA
AAGAAATCAAAATCTTCTGCTCCACACAGTTTCAAGC
Length of connected seq. 687
Full length Seq ID -
Full length Seq. -
Length of full length seq. -