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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN191
Library CH
(Link to library)
Clone ID CHN191
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16709-1
Original site URL
Representative seq. ID CHN191P
(Link to Original site)
Representative DNA sequence 
>CHN191 (CHN191Q) /CSM/CH/CHN1-D/CHN191Q.Seq.d/
AAAGAAAATAATTATTATTATAAAAAATGGCGATAGAAGAAGAATCATCAAATTCTGGTG
TATCAACATCAATTGATAATTTAGGGTCATCAATTGATGGAAAGGGTTCATCTAAAGGTA
AACAAGGTGATATGGAAGGTATTGATAATGAAGTTTTTGTTTATGGAGGGGATGAAAATC
ATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTCATACT
ATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGAAAAAA
ATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGTTGGTG
CTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTATTTTAT
ATTGTTTTGGAGCTGCTATTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGACAGTC
CAGGTGAAAGATCACCATGGGGTTTAATCGTTGGTTTAACTTGTATTGCAATTGGTACAG
GTGGTATTAAACCAXXXXXXXXXXGNTAATTNCAAANAANTAGATGTTGTAANTCAAAAA
AATTTATNATTTTTTTNAAATCCAATTATTAATAATAANAACNATAATAATAACTCNCCC
TTGGGTAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
rk*lll*KMAIEEESSNSGVSTSIDNLGSSIDGKGSSKGKQGDMEGIDNEVFVYGGDENH
FPSSIKYIMGNEICERYSYYALRGILTNYLISFMGYSEKNASSIGHGFNAGAYIFSLVGA
YVADGVLGKYKTILYFSILYCFGAAIFSITAIPGITGDSPGERSPWGLIVGLTCIAIGTG
GIKP---

---XNXKXXDVVXQKNLXFFXNPIINNXNXNNNSPLGN
Translated Amino Acid sequence (All Frames) 
Frame A:
kennyyykkwr*kknhqilvyqhqlii*ghqlmervhlkvnkviwkvlimkflfmegmki
ifhhqlnilwvmkfvkgihtml*evf*qii*svswdilkkmllqlvtvlmlvliffhllv
lmllmvf*entkqfyisvfyivlellffqllqfqellvtvqvkdhhgv*slv*lvlqlvq
vvln---

---XNXKXXDVVXQKNLXFFXNPIINNXNXNNNSPLGN

Frame B:
kkiiiiikngdrrriikfwcinin**frvin*wkgfi*r*tr*ygry***sfclwrg*ks
fsiin*iyyg**nl*kvfilcfkryfnklfnqfhgif*kkcffnwsrf*cwclyfftcwc
lcc*wcfrkiqnnfifqyfilfwscyffnycnsrnyw*qsr*kitmgfnrwfnlycnwyr
wy*t---

---xixxx*ml*xkkiyxffxiqlliixtiiitxpwvi

Frame C:
rk*lll*KMAIEEESSNSGVSTSIDNLGSSIDGKGSSKGKQGDMEGIDNEVFVYGGDENH
FPSSIKYIMGNEICERYSYYALRGILTNYLISFMGYSEKNASSIGHGFNAGAYIFSLVGA
YVADGVLGKYKTILYFSILYCFGAAIFSITAIPGITGDSPGERSPWGLIVGLTCIAIGTG
GIKP---

---*xqxxrccxskkfxifxksny***xx***lxlg*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN191 (CHN191Q) /CSM/CH/CHN1-D/CHN191Q.Seq.d/                       1057   0.0
AFG212 (AFG212Q) /CSM/AF/AFG2-A/AFG212Q.Seq.d/                       1049   0.0
AFN577 (AFN577Q) /CSM/AF/AFN5-D/AFN577Q.Seq.d/                       1041   0.0
SSF646 (SSF646Q) /CSM/SS/SSF6-B/SSF646Q.Seq.d/                       1039   0.0
CFI287 (CFI287Q) /CSM/CF/CFI2-D/CFI287Q.Seq.d/                       1003   0.0
SSM629 (SSM629Q) /CSM/SS/SSM6-B/SSM629Q.Seq.d/                        979   0.0
SFK509 (SFK509Q) /CSM/SF/SFK5-A/SFK509Q.Seq.d/                        854   0.0
SSI647 (SSI647Q) /CSM/SS/SSI6-B/SSI647Q.Seq.d/                        686   0.0
AFI836 (AFI836Q) /CSM/AF/AFI8-B/AFI836Q.Seq.d/                        650   0.0
AFM445 (AFM445Q) /CSM/AF/AFM4-B/AFM445Q.Seq.d/                        640   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   583   0.0    12
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    78   9e-29  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-10  17
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-09  17
AE017332|AE017332.1 Mycoplasma hyopneumoniae 232, complete genome.    40   6e-09  26
AJ011856|AJ011856.1 Saccharomyces cerevisiae complete mitochondrial genome.    36   4e-08  10
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   6e-08  13
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   2e-07  26
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome.        34   2e-07  21
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     32   1e-06  16
dna update 2005. 6.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...   328   1e-88
BT031310_1(BT031310|pid:none) Drosophila melanogaster GH01855 fu...   119   8e-26
AE014298_589(AE014298|pid:none) Drosophila melanogaster chromoso...   119   8e-26
AE014298_588(AE014298|pid:none) Drosophila melanogaster chromoso...   119   8e-26
(Q95TX0) RecName: Full=Oligopeptide transporter 1; AltName: Full...   119   8e-26
U85982_1(U85982|pid:none) Drosophila melanogaster oligopeptide t...   115   1e-24
CP000383_1575(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...   106   7e-22
BC124581_1(BC124581|pid:none) Danio rerio solute carrier family ...   105   9e-22
BX548071_2(BX548071|pid:none) Zebrafish DNA sequence from clone ...   105   9e-22
CP000113_2541(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   105   1e-21
protein update 2009. 4. 9
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.28  top: 0.40  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHN191 is end
5' end seq. ID CHN191F
5' end seq. 
>CHN191F.Seq
AAAGAAAATAATTATTATTATAAAAAATGGCGATAGAAGAAGAATCATCAAATTCTGGTG
TATCAACATCAATTGATAATTTAGGGTCATCAATTGATGGAAAGGGTTCATCTAAAGGTA
AACAAGGTGATATGGAAGGTATTGATAATGAAGTTTTTGTTTATGGAGGGGATGAAAATC
ATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTCATACT
ATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGAAAAAA
ATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGTTGGTG
CTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTATTTTAT
ATTGTTTTGGAGCTGCTATTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGACAGTC
CAGGTGAAAGATCACCATGGGGTTTAATCGTTGGTTTAACTTGTATTGCAATTGGTACAG
GTGGTATTAAACCANNNNNNNNNN
Length of 5' end seq. 564
3' end seq. ID CHN191Z
3' end seq. 
>CHN191Z.Seq
NNNNNNNNNNGNTAATTNCAAANAANTAGATGTTGTAANTCAAAAAAATTTATNATTTTT
TTNAAATCCAATTATTAATAATAANAACNATAATAATAACTCNCCCTTGGGTAATA
Length of 3' end seq. 116
Connected seq. ID CHN191P
Connected seq. 
>CHN191P.Seq
AAAGAAAATAATTATTATTATAAAAAATGGCGATAGAAGAAGAATCATCAAATTCTGGTG
TATCAACATCAATTGATAATTTAGGGTCATCAATTGATGGAAAGGGTTCATCTAAAGGTA
AACAAGGTGATATGGAAGGTATTGATAATGAAGTTTTTGTTTATGGAGGGGATGAAAATC
ATTTTCCATCATCAATTAAATATATTATGGGTAATGAAATTTGTGAAAGGTATTCATACT
ATGCTTTAAGAGGTATTTTAACAAATTATTTAATCAGTTTCATGGGATATTCTGAAAAAA
ATGCTTCTTCAATTGGTCACGGTTTTAATGCTGGTGCTTATATTTTTTCACTTGTTGGTG
CTTATGTTGCTGATGGTGTTTTAGGAAAATACAAAACAATTTTATATTTCAGTATTTTAT
ATTGTTTTGGAGCTGCTATTTTTTCAATTACTGCAATTCCAGGAATTACTGGTGACAGTC
CAGGTGAAAGATCACCATGGGGTTTAATCGTTGGTTTAACTTGTATTGCAATTGGTACAG
GTGGTATTAAACCA----------GNTAATTNCAAANAANTAGATGTTGTAANTCAAAAA
AATTTATNATTTTTTTNAAATCCAATTATTAATAATAANAACNATAATAATAACTCNCCC
TTGGGTAATA
Length of connected seq. 660
Full length Seq ID -
Full length Seq. -
Length of full length seq. -