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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHN160
Library CH
(Link to library)
Clone ID CHN160
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11548-1
Original site URL
Representative seq. ID CHN160P
(Link to Original site)
Representative DNA sequence 
>CHN160 (CHN160Q) /CSM/CH/CHN1-C/CHN160Q.Seq.d/
ATAGTTTTAAAATATTTATCTATACAAACTAGATACATACATACACACATATATATATAT
ATATTTATAAAATACAAATTAAAATTTTATATTTTGTTACTATGTTGTTTTAAGAAATAT
TAAAAGAATAAAATAATCAATTATAGTAATAACAACGCATCATATTGTACTTTTTAAAAT
AATATTTAATTTTATTTTTTATTTTATTTTTATACTCAATTTAAAGAAATTGGATTGAAT
AATTAATAAAACAAAAAAGAAATAATGAAAATAAAATTTAGTTTAATATTTTTTATATGT
TTTTTAATTAAAAATATATATTCAAGAGAACAAACAACCCATGGATTACATATAAAAGGA
AATACAATATATAACTCTGATGATGAAATAATAATGCTTAGAGGAGTAAATCGTCCTGGT
ACAGAATATATGGTGTGTTCAAAATGCACAAGTTTTCGATGGACCATGTGATTCAGAACA
TATTGAATTACTTAGAAGCTGGAAATTGAATGCAATTCGTGTACCATTGAATGAAGATTX
XXXXXXXXXGTTGGTCGGTGATTGTAATGTCCCATCACTCATTGAAAATTATGAAGGTGA
TCCAACTACATTTGGTCAAGGTTATAAAAATCATTTAGAAAGATTGGCAAAAAACAATGG
TAGACCACTTCAATTCTCTGATACCTTTGATATCTACAATGATAAGATTACCCATTGGGC
CGATGATTGGAGCACTTCAAAACCCGTTATAAACTCCTCCGAGGTAATTCCATGTGAAGG
AAAATTTTCGATTAAATTTAATCCCATCAAAGAGAAATCTTTACATTTCATGTGCTATGG
CTGTATTCAAACAAATGTACACAAACAATTGGAATTTTGGATCCATGGTGGTGAAATGGG
TAGCCAAGATCTCAATCTTCAAATATTACATAAGAAACCTGATCACACCAATGAAGTGAA
ACAAACCTATTCGGTCGAACAACTCAATGGCAAACCAATTGCTGCTAATACTTGGACTAA
AATTATTGTTCCTTTTGATGACTCTGATGAAGTTTTCGATGGATTTTGGTTAAAAGCTAA
TGAAGATCAACCAACAGTTTATGTTGATAAAATCACTGTTCGTGCCAGAAAAGAACCAGC
TGATAATGATAATAATACTTCAAAATTAATTTTCAATTTATTTACTATTATTTTAATTTC
TATTTTATCAGTTTNA
sequence update 2002.10.25
Translated Amino Acid sequence 
*f*niylykldtyihtyiyiyl*ntn*nfifcyyvvlrnikrik*siivitthhivlfki
ifnfifyfifilnlkkld*iinktkkk**k*nlv*yflyvf*lkiyiqenkqpmdyi*ke
iqyitlmmk**clee*IVLVQNIWCVQNAQVFDGPCDSEHIELLRSWKLNAIRVPLNED-
--

---LVGDCNVPSLIENYEGDPTTFGQGYKNHLERLAKNNGRPLQFSDTFDIYNDKITHWA
DDWSTSKPVINSSEVIPCEGKFSIKFNPIKEKSLHFMCYGCIQTNVHKQLEFWIHGGEMG
SQDLNLQILHKKPDHTNEVKQTYSVEQLNGKPIAANTWTKIIVPFDDSDEVFDGFWLKAN
EDQPTVYVDKITVRARKEPADNDNNTSKLIFNLFTIILISILSVX
Translated Amino Acid sequence (All Frames) 
Frame A:
ivlkylsiqtryihthiyiyifikyklkfyilllccfkky*knkiinysnnnasyctf*n
ni*fyflfyfytqfkeiglnn**nkkeimkikfslifficflikniysreqtthglhikg
ntiynsddeiimlrgvnrpgteymvcskctsfrwtm*frty*it*kleiecnsctie*r-
--

---vgr*l*cpith*kl*r*snyiwsrl*ksfrkigkkqw*ttsil*yl*ylq**dyplg
r*lehfktrykllrgnsm*rkifd*i*shqreiftfhvlwlysnkctqtigildpww*ng
*prsqssnit*et*shq*setnlfgrttqwqtncc*yld*nycsf**l**sfrwilvks*
*rstnslc**nhcscqkrts*****yfkinfqfiyyyfnfyfisx

Frame B:
*f*niylykldtyihtyiyiyl*ntn*nfifcyyvvlrnikrik*siivitthhivlfki
ifnfifyfifilnlkkld*iinktkkk**k*nlv*yflyvf*lkiyiqenkqpmdyi*ke
iqyitlmmk**clee*IVLVQNIWCVQNAQVFDGPCDSEHIELLRSWKLNAIRVPLNED-
--

---LVGDCNVPSLIENYEGDPTTFGQGYKNHLERLAKNNGRPLQFSDTFDIYNDKITHWA
DDWSTSKPVINSSEVIPCEGKFSIKFNPIKEKSLHFMCYGCIQTNVHKQLEFWIHGGEMG
SQDLNLQILHKKPDHTNEVKQTYSVEQLNGKPIAANTWTKIIVPFDDSDEVFDGFWLKAN
EDQPTVYVDKITVRARKEPADNDNNTSKLIFNLFTIILISILSVX

Frame C:
sfkifiytn*ihtythiyiyiykiqikilyfvtmlf*eilke*nnql***qriilyflk*
ylilffilflysi*rnwie*likqkrnnenki*fnifymffn*kyifkrtnnpwitykrk
yni*l***nnna*rsksswyriygvfkmhkfsmdhviqnilnyleagn*mqfvyh*mki-
--

---wsvivmshhslkimkviqlhlvkvikii*kdwqktmvdhfnsliplistmirlpigp
migalqnpl*tppr*fhvkenfrlnlipskrnlyiscamavfkqmytnnwnfgsmvvkwv
akisifkyyirnlitpmk*nkpirsnnsmanqlllilglkllfllmtlmkfsmdfg*klm
kinqqfmlikslfvpeknqlimiiilqn*fsiylllf*flfyqf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN160 (CHN160Q) /CSM/CH/CHN1-C/CHN160Q.Seq.d/                       1709   0.0
SFL333 (SFL333Q) /CSM/SF/SFL3-B/SFL333Q.Seq.d/                       1217   0.0
CHB435 (CHB435Q) /CSM/CH/CHB4-B/CHB435Q.Seq.d/                       1193   0.0
CFA150 (CFA150Q) /CSM/CF/CFA1-C/CFA150Q.Seq.d/                       1144   0.0
SSE653 (SSE653Q) /CSM/SS/SSE6-C/SSE653Q.Seq.d/                       1110   0.0
SSE611 (SSE611Q) /CSM/SS/SSE6-A/SSE611Q.Seq.d/                       1043   0.0
SSF751 (SSF751Q) /CSM/SS/SSF7-C/SSF751Q.Seq.d/                       1027   0.0
CHK464 (CHK464Q) /CSM/CH/CHK4-C/CHK464Q.Seq.d/                        912   0.0
CHC334 (CHC334Q) /CSM/CH/CHC3-B/CHC334Q.Seq.d/                        743   0.0
CFI191 (CFI191Q) /CSM/CF/CFI1-D/CFI191Q.Seq.d/                        396   e-109
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    38   1e-09  19
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    36   1e-09  21
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   1e-09  27
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36   2e-08  19
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38   1e-07  15
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    34   2e-07  22
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   2e-07  17
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   3e-07  22
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   6e-07  22
AC006280|AC006280.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   8e-07  14
dna update 2005. 6.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P22699) RecName: Full=Endoglucanase;          EC=3.2.1.4; AltNa...    69   4e-10
CP000033_1682(CP000033|pid:none) Lactobacillus acidophilus NCFM,...    35   3.9
AP007162_70(AP007162|pid:none) Aspergillus oryzae RIB40 genomic ...    35   5.1
protein update 2008.11. 4
PSORT 

 psg: 0.83  gvh: 0.40  alm: 0.22  top: 0.47  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.02  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHN160 is cyt
5' end seq. ID CHN160F
5' end seq. 
>CHN160F.Seq
ATAGTTTTAAAATATTTATCTATACAAACTAGATACATACATACACACATATATATATAT
ATATTTATAAAATACAAATTAAAATTTTATATTTTGTTACTATGTTGTTTTAAGAAATAT
TAAAAGAATAAAATAATCAATTATAGTAATAACAACGCATCATATTGTACTTTTTAAAAT
AATATTTAATTTTATTTTTTATTTTATTTTTATACTCAATTTAAAGAAATTGGATTGAAT
AATTAATAAAACAAAAAAGAAATAATGAAAATAAAATTTAGTTTAATATTTTTTATATGT
TTTTTAATTAAAAATATATATTCAAGAGAACAAACAACCCATGGATTACATATAAAAGGA
AATACAATATATAACTCTGATGATGAAATAATAATGCTTAGAGGAGTAAATCGTCCTGGT
ACAGAATATATGGTGTGTTCAAAATGCACAAGTTTTCGATGGACCATGTGATTCAGAACA
TATTGAATTACTTAGAAGCTGGAAATTGAATGCAATTCGTGTACCATTGAATGAAGATTN
NNNNNNNNN
Length of 5' end seq. 549
3' end seq. ID CHN160Z
3' end seq. 
>CHN160Z.Seq
NNNNNNNNNNGTTGGTCGGTGATTGTAATGTCCCATCACTCATTGAAAATTATGAAGGTG
ATCCAACTACATTTGGTCAAGGTTATAAAAATCATTTAGAAAGATTGGCAAAAAACAATG
GTAGACCACTTCAATTCTCTGATACCTTTGATATCTACAATGATAAGATTACCCATTGGG
CCGATGATTGGAGCACTTCAAAACCCGTTATAAACTCCTCCGAGGTAATTCCATGTGAAG
GAAAATTTTCGATTAAATTTAATCCCATCAAAGAGAAATCTTTACATTTCATGTGCTATG
GCTGTATTCAAACAAATGTACACAAACAATTGGAATTTTGGATCCATGGTGGTGAAATGG
GTAGCCAAGATCTCAATCTTCAAATATTACATAAGAAACCTGATCACACCAATGAAGTGA
AACAAACCTATTCGGTCGAACAACTCAATGGCAAACCAATTGCTGCTAATACTTGGACTA
AAATTATTGTTCCTTTTGATGACTCTGATGAAGTTTTCGATGGATTTTGGTTAAAAGCTA
ATGAAGATCAACCAACAGTTTATGTTGATAAAATCACTGTTCGTGCCAGAAAAGAACCAG
CTGATAATGATAATAATACTTCAAAATTAATTTTCAATTTATTTACTATTATTTTAATTT
CTATTTTATCAGTTTNA
Length of 3' end seq. 677
Connected seq. ID CHN160P
Connected seq. 
>CHN160P.Seq
ATAGTTTTAAAATATTTATCTATACAAACTAGATACATACATACACACATATATATATAT
ATATTTATAAAATACAAATTAAAATTTTATATTTTGTTACTATGTTGTTTTAAGAAATAT
TAAAAGAATAAAATAATCAATTATAGTAATAACAACGCATCATATTGTACTTTTTAAAAT
AATATTTAATTTTATTTTTTATTTTATTTTTATACTCAATTTAAAGAAATTGGATTGAAT
AATTAATAAAACAAAAAAGAAATAATGAAAATAAAATTTAGTTTAATATTTTTTATATGT
TTTTTAATTAAAAATATATATTCAAGAGAACAAACAACCCATGGATTACATATAAAAGGA
AATACAATATATAACTCTGATGATGAAATAATAATGCTTAGAGGAGTAAATCGTCCTGGT
ACAGAATATATGGTGTGTTCAAAATGCACAAGTTTTCGATGGACCATGTGATTCAGAACA
TATTGAATTACTTAGAAGCTGGAAATTGAATGCAATTCGTGTACCATTGAATGAAGATT-
---------GTTGGTCGGTGATTGTAATGTCCCATCACTCATTGAAAATTATGAAGGTGA
TCCAACTACATTTGGTCAAGGTTATAAAAATCATTTAGAAAGATTGGCAAAAAACAATGG
TAGACCACTTCAATTCTCTGATACCTTTGATATCTACAATGATAAGATTACCCATTGGGC
CGATGATTGGAGCACTTCAAAACCCGTTATAAACTCCTCCGAGGTAATTCCATGTGAAGG
AAAATTTTCGATTAAATTTAATCCCATCAAAGAGAAATCTTTACATTTCATGTGCTATGG
CTGTATTCAAACAAATGTACACAAACAATTGGAATTTTGGATCCATGGTGGTGAAATGGG
TAGCCAAGATCTCAATCTTCAAATATTACATAAGAAACCTGATCACACCAATGAAGTGAA
ACAAACCTATTCGGTCGAACAACTCAATGGCAAACCAATTGCTGCTAATACTTGGACTAA
AATTATTGTTCCTTTTGATGACTCTGATGAAGTTTTCGATGGATTTTGGTTAAAAGCTAA
TGAAGATCAACCAACAGTTTATGTTGATAAAATCACTGTTCGTGCCAGAAAAGAACCAGC
TGATAATGATAATAATACTTCAAAATTAATTTTCAATTTATTTACTATTATTTTAATTTC
TATTTTATCAGTTTNA
Length of connected seq. 1206
Full length Seq ID -
Full length Seq. -
Length of full length seq. -