>CHN141 (CHN141Q) /CSM/CH/CHN1-B/CHN141Q.Seq.d/
ATATATTTATATATATAATATTATTTTTATTCATATAGAATTATAATTAATAATGTCAGA
TAATTTATATGATGAATTTGGTAATTATATTGGAGAAAGTTTAGAAGATGAAGAAGTAAC
ATATGATCAACAACAGCAACAACAAGAAGAGGAGGAGGAAGAGGATAGAAAACCAAACCA
ACAACAACAACAACAACAATATAATGACGATGAAGCACATATAGAAGAAACAGGAGATAA
TGATGGTGGTGATGAAATGAATATAGATAGAGATAATATACAAATTTCAACAACATCAGC
AATTGTATTACATGAAGATAAACAATATTTTCCAGATGCATCAGATGTTTATAAAGGTGT
TGAAGTTATGGTACAAGATGAAGATTCACAACCATTATCAAAACCAATCATTGATCCAAA
GAAAAATAAATCATTTACAATCACTGAAAAAGATTATCCAGAAACAAGTTATTCTAAACA
ATTTTTAACCCGATTTATCAACATATCCACAATTCATTAGAAATGTTTCTTTAATCGGTC
AATTACATCATGGTAAAACTTCATTCATGGATATGTTATTTCAACAAACTCATGAAAAGA
XXXXXXXXXXTTGGGCATTTGGTCCAGATATCAATGGTCCAAAATATCCTATTGAACGAT
ACCCTCCCAACTGAAGTGAACAGATCCCTTCTATTATCCATCTCTGATTCCGTGGTTAGA
GGCTTCCAATGGGCCACTAAAGAAGGTCCATTGGTTGATGAACCAATTAGAAATGTAAAA
TTCAAACTATTGGATGCCACCATTGCCTCTGAACCAATTCAAAGATCCAGTGGCCATATT
GTACCTGCCGCACGTTCTGTAACACATTCATCATTTTTAGTATCAACACCACGTTTAATG
GAGCCTGTTTATCTAGTTGAAGTAATCTCACCAATCGATTGTCTCAATGCAATCGAAAAT
GTTTTAACACGTCGTCGTGGTCATATCATTCATGACTTGCCAAAACCTGGTACACCACTT
CACATTACAAAAGCTTTAATACCCGTATTGGATTCATATGGTTTTGAAACCGATCTTAGA
GTTCATACTCAAGGTCAAGCTTTCTGTCTTTCAACATTTGATCATTGGCAAATGGTTCCA
GGTGATCCTTTAGATAAATCAATTAAACTTCGTCCATTAGAACCTTCTCCAAAACTTCAT
TTGGCTCGTGAACTTTTAATCAAAACTCGTAAGAGAAAAGGTCTATCTGAAGATGTTAAT
TTTGGTAAACATTTCGATNAACAACTTTTATTATACTTTATNCTCAAAAANNAAAATCAA
TATAG

ifiyiilflfi*nyn**cqiiymmnlviilekv*kmkk*hminnsnnkkrrrkrienqtn
nnnnnnimtmkhi*kkqeimmvvmk*i*ieiiykfqqhqqlyymkinnifqmhqmfikvl
klwykmkihnhyqnqsliqrkinhlqslkkiiqkqvilnnf*PDLSTYPQFIRNVSLIGQ
LHHGKTSFMDMLFQQTHEK---

---GHLVQISMVQNILLNDTLPTEVNRSLLLSISDSVVRGFQWATKEGPLVDEPIRNVKF
KLLDATIASEPIQRSSGHIVPAARSVTHSSFLVSTPRLMEPVYLVEVISPIDCLNAIENV
LTRRRGHIIHDLPKPGTPLHITKALIPVLDSYGFETDLRVHTQGQAFCLSTFDHWQMVPG
DPLDKSIKLRPLEPSPKLHLARELLIKTRKRKGLSEDVNFGKHFDXQLLLYFXLKXXNQY

Frame A:
iylyi*yyfysyriiinnvr*fi**iw*lywrkfrr*rsni*sttattrrgggrg*ktkp
tttttti**r*styrrnrr**ww**neyr*r*ytnfnnisncit*r*tifsrcircl*rc
*sygtr*rfttiiktnh*skek*iiynh*krlsrnklf*tifnpiyqhihnslemfl*sv
nyimvklhswicyfnklmkr---

---lgiwsryqwskisy*tipsqlk*tdpfyypslipwleasngplkkvhwlmnqlem*n
snywmpplplnqfkdpvailylphvl*hihhf*yqhhv*wslfi*lk*shqsivsmqskm
f*hvvvvisfmtcqnlvhhftlqkl*ypywihmvlkpilefilkvklsvfqhliigkwfq
vil*inqlnfvh*nllqnfiwlvnf*sklvrekvylkmlilvnisxnnfyytlxskxkin
i

Frame B:
yiyiyniifihiel*limsdnlydefgnyigesledeevtydqqqqqqeeeeeedrkpnq
qqqqqqynddeahieetgdndggdemnidrdniqisttsaivlhedkqyfpdasdvykgv
evmvqdedsqplskpiidpkknksftitekdypetsyskqfltrfinistih*kcffnrs
itsw*nfihgyvistns*k---

---wafgpdingpkypieryppn*seqipsiihl*frg*rlpmgh*rrsig**tn*kcki
qtigchhcl*tnskiqwpyctcrtfcntfiifsinttfngaclss*snltnrlsqcnrkc
fntsswsyhs*laktwyttshyksfntrigfiwf*nrs*ssysrssflsfni*slangsr
*sfr*in*tssirtfsktsfgs*tfnqns*ekrsi*rc*fw*tfrxttfiilyxqkxksi
*

Frame C:
ifiyiilflfi*nyn**cqiiymmnlviilekv*kmkk*hminnsnnkkrrrkrienqtn
nnnnnnimtmkhi*kkqeimmvvmk*i*ieiiykfqqhqqlyymkinnifqmhqmfikvl
klwykmkihnhyqnqsliqrkinhlqslkkiiqkqvilnnf*PDLSTYPQFIRNVSLIGQ
LHHGKTSFMDMLFQQTHEK---

---GHLVQISMVQNILLNDTLPTEVNRSLLLSISDSVVRGFQWATKEGPLVDEPIRNVKF
KLLDATIASEPIQRSSGHIVPAARSVTHSSFLVSTPRLMEPVYLVEVISPIDCLNAIENV
LTRRRGHIIHDLPKPGTPLHITKALIPVLDSYGFETDLRVHTQGQAFCLSTFDHWQMVPG
DPLDKSIKLRPLEPSPKLHLARELLIKTRKRKGLSEDVNFGKHFDXQLLLYFXLKXXNQY

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHN141 (CHN141Q) /CSM/CH/CHN1-B/CHN141Q.Seq.d/                       2149   0.0
VHK512 (VHK512Q) /CSM/VH/VHK5-A/VHK512Q.Seq.d/                       1326   0.0
AHK120 (AHK120Q) /CSM/AH/AHK1-A/AHK120Q.Seq.d/                       1318   0.0
AHL644 (AHL644Q) /CSM/AH/AHL6-B/AHL644Q.Seq.d/                       1312   0.0
SHC595 (SHC595Q) /CSM/SH/SHC5-D/SHC595Q.Seq.d/                       1310   0.0
AHA520 (AHA520Q) /CSM/AH/AHA5-A/AHA520Q.Seq.d/                       1310   0.0
AHK366 (AHK366Q) /CSM/AH/AHK3-C/AHK366Q.Seq.d/                       1304   0.0
VHA196 (VHA196Q) /CSM/VH/VHA1-D/VHA196Q.Seq.d/                       1302   0.0
CHM739 (CHM739Q) /CSM/CH/CHM7-B/CHM739Q.Seq.d/                       1294   0.0
CHM277 (CHM277Q) /CSM/CH/CHM2-D/CHM277Q.Seq.d/                       1294   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ821374|AJ821374.1 Theileria annulata EST, clone C0005205b23.     48   1e-15  5
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    66   9e-14  12
BI742991|BI742991.1 kx37e02.y1 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:Q19070 Q19070 ELONGATION FACTOR 2-LIKE ;, mRNA sequence.    78   3e-11  2
BI743756|BI743756.1 kx52f02.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O08810 O08810 U5-116KD. ;, mRNA sequence.    78   3e-11  2
BI501287|BI501287.1 kx30d02.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O08810 O08810 U5-116KD. ;, mRNA sequence.    78   4e-11  2
BI743844|BI743844.1 kx53f10.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O08810 O08810 U5-116KD. ;, mRNA sequence.    78   5e-11  2
BX563928|BX563928.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse69f08_p1c.    74   8e-09  1
CD681230|CD681230.1 tac23e08.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    44   2e-06  3
CN566383|CN566383.1 taf91c04.y1 Hydra EST -Kiel 1 Hydra magnipapillata cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    44   2e-06  3
CF777577|CF777577.1 tad12g02.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    44   2e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK221352_1(AK221352|pid:none) Arabidopsis thaliana mRNA for elon...   314   1e-84
AK102908_1(AK102908|pid:none) Oryza sativa Japonica Group cDNA c...   306   1e-81
BC090572_1(BC090572|pid:none) Xenopus tropicalis eftud2 protein,...   303   9e-81
BC044041_1(BC044041|pid:none) Xenopus laevis similar to U5 snRNP...   303   9e-81
BC041724_1(BC041724|pid:none) Xenopus laevis U5 snRNP-specific p...   303   1e-80
(Q15029) RecName: Full=116 kDa U5 small nuclear ribonucleoprotei...   302   1e-80
CR456774_1(CR456774|pid:none) Homo sapiens full open reading fra...   302   1e-80
AK172875_1(AK172875|pid:none) Mus musculus mRNA for mKIAA0031 pr...   302   1e-80
BC002360_1(BC002360|pid:none) Homo sapiens elongation factor Tu ...   302   1e-80
(A4FUD3) RecName: Full=116 kDa U5 small nuclear ribonucleoprotei...   302   1e-80

 psg: 0.81  gvh: 0.35  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.03
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHN141 is cyt

>CHN141F.Seq
ATATATTTATATATATAATATTATTTTTATTCATATAGAATTATAATTAATAATGTCAGA
TAATTTATATGATGAATTTGGTAATTATATTGGAGAAAGTTTAGAAGATGAAGAAGTAAC
ATATGATCAACAACAGCAACAACAAGAAGAGGAGGAGGAAGAGGATAGAAAACCAAACCA
ACAACAACAACAACAACAATATAATGACGATGAAGCACATATAGAAGAAACAGGAGATAA
TGATGGTGGTGATGAAATGAATATAGATAGAGATAATATACAAATTTCAACAACATCAGC
AATTGTATTACATGAAGATAAACAATATTTTCCAGATGCATCAGATGTTTATAAAGGTGT
TGAAGTTATGGTACAAGATGAAGATTCACAACCATTATCAAAACCAATCATTGATCCAAA
GAAAAATAAATCATTTACAATCACTGAAAAAGATTATCCAGAAACAAGTTATTCTAAACA
ATTTTTAACCCGATTTATCAACATATCCACAATTCATTAGAAATGTTTCTTTAATCGGTC
AATTACATCATGGTAAAACTTCATTCATGGATATGTTATTTCAACAAACTCATGAAAAGA
NNNNNNNNNN

>CHN141Z.Seq
NNNNNNNNNNTTGGGCATTTGGTCCAGATATCAATGGTCCAAAATATCCTATTGAACGAT
ACCCTCCCAACTGAAGTGAACAGATCCCTTCTATTATCCATCTCTGATTCCGTGGTTAGA
GGCTTCCAATGGGCCACTAAAGAAGGTCCATTGGTTGATGAACCAATTAGAAATGTAAAA
TTCAAACTATTGGATGCCACCATTGCCTCTGAACCAATTCAAAGATCCAGTGGCCATATT
GTACCTGCCGCACGTTCTGTAACACATTCATCATTTTTAGTATCAACACCACGTTTAATG
GAGCCTGTTTATCTAGTTGAAGTAATCTCACCAATCGATTGTCTCAATGCAATCGAAAAT
GTTTTAACACGTCGTCGTGGTCATATCATTCATGACTTGCCAAAACCTGGTACACCACTT
CACATTACAAAAGCTTTAATACCCGTATTGGATTCATATGGTTTTGAAACCGATCTTAGA
GTTCATACTCAAGGTCAAGCTTTCTGTCTTTCAACATTTGATCATTGGCAAATGGTTCCA
GGTGATCCTTTAGATAAATCAATTAAACTTCGTCCATTAGAACCTTCTCCAAAACTTCAT
TTGGCTCGTGAACTTTTAATCAAAACTCGTAAGAGAAAAGGTCTATCTGAAGATGTTAAT
TTTGGTAAACATTTCGATNAACAACTTTTATTATACTTTATNCTCAAAAANNAAAATCAA
TATAG

>CHN141P.Seq
ATATATTTATATATATAATATTATTTTTATTCATATAGAATTATAATTAATAATGTCAGA
TAATTTATATGATGAATTTGGTAATTATATTGGAGAAAGTTTAGAAGATGAAGAAGTAAC
ATATGATCAACAACAGCAACAACAAGAAGAGGAGGAGGAAGAGGATAGAAAACCAAACCA
ACAACAACAACAACAACAATATAATGACGATGAAGCACATATAGAAGAAACAGGAGATAA
TGATGGTGGTGATGAAATGAATATAGATAGAGATAATATACAAATTTCAACAACATCAGC
AATTGTATTACATGAAGATAAACAATATTTTCCAGATGCATCAGATGTTTATAAAGGTGT
TGAAGTTATGGTACAAGATGAAGATTCACAACCATTATCAAAACCAATCATTGATCCAAA
GAAAAATAAATCATTTACAATCACTGAAAAAGATTATCCAGAAACAAGTTATTCTAAACA
ATTTTTAACCCGATTTATCAACATATCCACAATTCATTAGAAATGTTTCTTTAATCGGTC
AATTACATCATGGTAAAACTTCATTCATGGATATGTTATTTCAACAAACTCATGAAAAGA
----------TTGGGCATTTGGTCCAGATATCAATGGTCCAAAATATCCTATTGAACGAT
ACCCTCCCAACTGAAGTGAACAGATCCCTTCTATTATCCATCTCTGATTCCGTGGTTAGA
GGCTTCCAATGGGCCACTAAAGAAGGTCCATTGGTTGATGAACCAATTAGAAATGTAAAA
TTCAAACTATTGGATGCCACCATTGCCTCTGAACCAATTCAAAGATCCAGTGGCCATATT
GTACCTGCCGCACGTTCTGTAACACATTCATCATTTTTAGTATCAACACCACGTTTAATG
GAGCCTGTTTATCTAGTTGAAGTAATCTCACCAATCGATTGTCTCAATGCAATCGAAAAT
GTTTTAACACGTCGTCGTGGTCATATCATTCATGACTTGCCAAAACCTGGTACACCACTT
CACATTACAAAAGCTTTAATACCCGTATTGGATTCATATGGTTTTGAAACCGATCTTAGA
GTTCATACTCAAGGTCAAGCTTTCTGTCTTTCAACATTTGATCATTGGCAAATGGTTCCA
GGTGATCCTTTAGATAAATCAATTAAACTTCGTCCATTAGAACCTTCTCCAAAACTTCAT
TTGGCTCGTGAACTTTTAATCAAAACTCGTAAGAGAAAAGGTCTATCTGAAGATGTTAAT
TTTGGTAAACATTTCGATNAACAACTTTTATTATACTTTATNCTCAAAAANNAAAATCAA
TATAG